Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01120 ATGAATAAAGAGAACATGATACCTAAGGAGAAACCTGAGCTTGGGGAAAATGATTCTGCTTCAGCTTCATGTGAAGTAACAGCTGCTTCTCCTATTAACAAGGCTGATAACGTGACCGGGGAAGTTGAAGAATCAAGGCATGTATCCCCTCGGAGGCCGCAGAATCTCTTCTTTGACATACCCTTAAGAACTACGGAAGCATTCATTCAGGACTTTGTTGCAATCAAGATACCTCCCACACCGAGTCCCACCCCAACTCCCAAAAGAGTGAATTTTCGCATTGATTCCAGCCCAAGTGCTGTTACTTCCACTAGTCCTCCGGGTCCAGGGTATTCTTCATCAAAAGGAAAACCATCTCGAAGGAGTCTCTTACCAAAATTGAGCTTCCGATATGGGCCATCATCAGATATTGACAAGTCTTCCACTGCAGCTCCTGAAACCTCATCTTCAGGCACAGAAGCGAAACCTTCCATATCAAGATCGCTATCCCTTACAAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTGCCGGTAACTCCAATTGCGTATTCAAATCTAGAATCCTCTCATGGAGGAATTGTTGATGGCTCTCTACATAGGAAAGAAACTCTGCAGCATATTTCTCGTTCATTGTCAGTCCCTGTTGACAACAAAGTACCAATAAAGAGAACAAACTCAGTTTTTCGTGTTATTCCTTCAACTCCTCGGGTCAAGGAAGGAAGTGAAATGGCTGCTGCGTCACCAAAAATCAATGAAGAAAACAATAATGCTGATGGTGAAGACATACCTGAAGAACAAGCCGTTTGTAGAATTTGTATGGTGGAGCTATGTGAAGGAGGTGAGACGTTTAAGATGGAGTGCAGTTGTAAAGGTGAACTTGCTCTTGCACATCAAGAATGTGCGATTAAATGGTTTAGCCTCAAAGGCAACAAAATCTGTGAAGTGTGCAAGCAGGAGGTTCAAAATCTTCCTGTGACTCTCTTGCGCATCCAGAATGCCCGAGTTCGAAATTATGGGGCAAGTAGGTCTTTGCTGGTAGATGTAAATAGCTACAGGGTTTGGCTTTGGCAGGAAGTTCCAGTTCTCGTCATTATTAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAATTACTGGTTGCAAAAATGGGTACAGGCGCAATTGTCACTTCTCTTCCTTTCTCATGTGTACTAGGTTTGCTTTCATCCATGACATCATCAACCATGGTGAAGAGCAGATTCATCTGGGTTTATGCATCTATACAGTTTGCTCTGGTGGTTCTCTTTGCACATGTCTTTTATAGCTTGGTCCACTTGCAGGCTGTGTTGTCCATTCTGCTTGCAGCATTTGCTGGAATGGGTGTTGCGATGACTGGCAGTTCAATTGTTGTCGAACTATCTAAATTCAGGAGAAGATTTCAGGCGTCATCGCGACAGGACCTTGGTTCTCAATCGATGAGTAGACCAGGACAATACCATGGAACTGTAAGCTCTCCCCAGGTGGTTACTCCAGAGTCTCGGCACACATTTGCTCAAAATACAGAAACTTGA 1554 0.4376 MNKENMIPKEKPELGENDSASASCEVTAASPINKADNVTGEVEESRHVSPRRPQNLFFDIPLRTTEAFIQDFVAIKIPPTPSPTPTPKRVNFRIDSSPSAVTSTSPPGPGYSSSKGKPSRRSLLPKLSFRYGPSSDIDKSSTAAPETSSSGTEAKPSISRSLSLTKIFTPRIKRTSSLPVTPIAYSNLESSHGGIVDGSLHRKETLQHISRSLSVPVDNKVPIKRTNSVFRVIPSTPRVKEGSEMAAASPKINEENNNADGEDIPEEQAVCRICMVELCEGGETFKMECSCKGELALAHQECAIKWFSLKGNKICEVCKQEVQNLPVTLLRIQNARVRNYGASRSLLVDVNSYRVWLWQEVPVLVIISMLAYFCFLEQLLVAKMGTGAIVTSLPFSCVLGLLSSMTSSTMVKSRFIWVYASIQFALVVLFAHVFYSLVHLQAVLSILLAAFAGMGVAMTGSSIVVELSKFRRRFQASSRQDLGSQSMSRPGQYHGTVSSPQVVTPESRHTFAQNTET* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01120 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 326 IPR013083 -
Pte15g01120 517 MobiDBLite consensus disorder prediction 87 119 - -
Pte15g01120 517 CDD RING_CH-C4HC3_MARCH 271 319 - -
Pte15g01120 517 ProSiteProfiles Zinc finger RING-CH-type profile. 263 325 IPR011016 GO:0008270
Pte15g01120 517 SUPERFAMILY RING/U-box 267 322 - -
Pte15g01120 517 MobiDBLite consensus disorder prediction 1 54 - -
Pte15g01120 517 PANTHER OS02G0165000 PROTEIN 28 488 - -
Pte15g01120 517 MobiDBLite consensus disorder prediction 134 159 - -
Pte15g01120 517 MobiDBLite consensus disorder prediction 478 517 - -
Pte15g01120 517 MobiDBLite consensus disorder prediction 1 16 - -
Pte15g01120 517 SMART ringv_2 270 319 IPR011016 GO:0008270
Pte15g01120 517 MobiDBLite consensus disorder prediction 20 34 - -
Pte15g01120 517 Pfam RING-variant domain 271 318 IPR011016 GO:0008270
Pte15g01120 517 MobiDBLite consensus disorder prediction 76 159 - -
Pte15g01120 517 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01120 Pte-Chr15 8384672 8388652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01120 271 325 C3H Transcription Factor Family AT2G37950 44.643 1.07e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01120 - - qsa:O6P43_028362 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01120 15 8384672 8388652 Pte15g01120 15 8384672 8388652 RCT