Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01108 ATGCCGAAACATAATGTATTCTTTCATATGAAGGGTTCTTGGTTCTTTGAAAAGAATTTCAATGGTGTATCAGACGAATTCTTCGATGATGTTGTCAAGTTTTTGGACCTCCCTCCAGAAGATATAGAAAAGAATGTCGTCGAAGAAGATTGGAACACTCAATTCCAAAGACTTGGTGAGACATGCTTTGACATCTTTGCTGTTCAACAACCTGGGTTGTGTAGCAATACCCGGGATGACTGTTCACTGGCACCCAATAAACCTTTACCTGCTCAGTATAATGATGTCTCCAAGCTAAGACAACTTCCAGAGGCTAGTGAAACCCGTTGTGGCAAAAGCATTCTCTGCCATAACAATGAACTAATTGATGTTAAAGATGTGCCCATGCTCCATACCTATAGTCCAGTTTCTGTATTTGAAAGCACCAGTTCTTGCTCTGTTGAAAACCCCACCTTTGGTCCAGCTATCCCTGTAAAGGGTGCAAGGAGCAAGCGCCGCCGAATTTCAAATCACAGTCCGCTGTTCTCAACACCATTCATCTTTTTTCCAGTTTTGGCGGACTCTGAGAATCTGGCTGCCTCTGGTTCAGAATTAGAAACCCACACTGGTCTGCTGACGAATGCATTCAAAAGGAAGCGGAGAAGAAAGGAATTGTCCCTAATCTCAGGTACTATGGAAATGAAAAGACATGGGAATCAAGATTCGACCGTACCTAGGAAATGCACTCATTGTGAGGTGACAAGGACGCCACAATGGAGAGAAGGACCTATGGGGCCGAAGACCCTTTGTAATGCTTGTGGAGTTCGTTACAGGTCTGGCCGCCTCTTTCCAGAATATAGACCTGCTGCAAGTCCTACTTTCGTGGAAGCTTTGCATTCGAACTGTCATAAGAAAGTTATAGAGATGAGAAGCAAAGCCAAAGCAGCCAGCTAG 933 0.4416 MPKHNVFFHMKGSWFFEKNFNGVSDEFFDDVVKFLDLPPEDIEKNVVEEDWNTQFQRLGETCFDIFAVQQPGLCSNTRDDCSLAPNKPLPAQYNDVSKLRQLPEASETRCGKSILCHNNELIDVKDVPMLHTYSPVSVFESTSSCSVENPTFGPAIPVKGARSKRRRISNHSPLFSTPFIFFPVLADSENLAASGSELETHTGLLTNAFKRKRRRKELSLISGTMEMKRHGNQDSTVPRKCTHCEVTRTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVEALHSNCHKKVIEMRSKAKAAS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01108 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 298 - -
Pte15g01108 310 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Pte15g01108 310 Gene3D - 231 308 IPR013088 GO:0006355|GO:0008270
Pte15g01108 310 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Pte15g01108 310 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Pte15g01108 310 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Pte15g01108 310 FunFam GATA transcription factor 228 310 - -
Pte15g01108 310 PANTHER GATA TRANSCRIPTION FACTOR 40 307 - -
Pte15g01108 310 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01108 Pte-Chr15 8305836 8308784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01108 17 305 C2C2-Gata Transcription Factor Family AT1G08010 39.384 9.47e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte15g01108 GATA 4.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01108 - - qsa:O6P43_000334 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01108 15 8305836 8308784 Pte15g01108 15 8305836 8308784 RCT
Pte17g00905 17 24185543 24189740 Pte15g01108 15 8305836 8308784 RCT