Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01090 ATGAGAAGTGTAGAATTTAAGGTCATTGAAACAGATCCTGGAGAATATTGTGTGGTTGCCCCAGATACTGAGATCTTTTGTGAAGGAGAACCTGTGAAAAGGGAGGATGAAGAGAGGTTGGATGAAGTTGGCTATGATGACGTGGGTGGTGTAAGGAAGCAAATGGCCCAGATCCGTGAGCTGGTAGAATTGCCGTTGAGGCATCCTCAGCTTTTCAAATCAATTGGAGTGAAACCTCCCAAGGGAATTTTGCTTTATGGCCCCCCAGGCTCTGGAAAGACTTTGATTGCTAAAGCTGTTGCTAATGAAACTGGTGCGTTCTTCTTCTGTATTAATGGACCGGAAATCATGTCCAAATTGGCTGGAGAGAGTGAAAGTAATCTCCGTAAGGCATTTGAAGAAGCTGAAAAGAATGCACCGTCTATCATCTTTATTGATGAGATTGACTCCATTGCTCCCAAGCGTGAGAAAACACATGGTGAAGTGGAAAGGCGGATTGTTTCTCAACTTCTGACTCTTATGGATGGGCTTAAATCTCGGGCTCATGTTATTGTCATCGGAGCTACTAATCGCCCCAACAGCATTGACCCAGCTTTGAGAAGATTTGGAAGATTTGATAGAGAAATAGATATTGGTGTGCCAGATGAAGTTGGAAGACTTGAAGTTTTGCGAATCCATACCAAGAATATGAAACTCTCTGATGAAGTTGATTTAGAGAGAATTGCAAAAGATACACATGGTTATGTTGGAGCCGACCTGGCAGCTCTATGTACTGAAGCTGCATTGCAGTGTATCAGAGAGAAAATGGATGTCATTGACTTGGAAGATGAGTCCATAGATGCTGAAGTGCTTAACTCCATGGCAGTTACAAATGAGCATTTCCATACAGCTCTGGGCAACAGTAACCCATCTGCATTGCGGGAAACAGTGGTTGAGGTTCCTAATGTCAGCTGGGAGGATATTGGAGGTCTTGAAAATGTCAAGCGGGAGCTTCAAGAGACTGTACAATATCCTGTGGAACATCCAGAAAAATTTGAAAAGTTCGGCATGTCACCATCAAAAGGTGTTCTCTTCTATGGTCCACCAGGATGTGGTAAAACTTTATTGGCCAAGGCCATTGCTAATGAATGCCAGGCAAACTTCATCAGTGTCAAAGGCCCTGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAACGTTCGAGAAATTTTTGACAAGGCTCGGCAGTCTGCTCCATGCGTCCTCTTCTTTGATGAGCTTGACTCTATTGCCACTCAGGTTTTCTCTGAACCTCAATGTGAATGTTTTCTATATCCTCCTTATATCATCTATGATGATCCAAAATTCCTATGTTGA 1359 0.4312 MRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEVLNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQVFSEPQCECFLYPPYIIYDDPKFLC* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01090 452 SMART AAA_5 352 450 IPR003593 GO:0016887
Pte15g01090 452 SMART AAA_5 79 215 IPR003593 GO:0016887
Pte15g01090 452 FunFam Cell division control 48 214 305 - -
Pte15g01090 452 PANTHER AAA-FAMILY ATPASE 37 277 - -
Pte15g01090 452 Pfam ATPase family associated with various cellular activities (AAA) 83 212 IPR003959 GO:0005524|GO:0016887
Pte15g01090 452 Pfam ATPase family associated with various cellular activities (AAA) 356 428 IPR003959 GO:0005524|GO:0016887
Pte15g01090 452 FunFam Uncharacterized protein 313 427 - -
Pte15g01090 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 304 IPR027417 -
Pte15g01090 452 Gene3D - 1 47 - -
Pte15g01090 452 Pfam AAA+ lid domain 236 277 IPR041569 -
Pte15g01090 452 SUPERFAMILY Cdc48 domain 2-like 1 42 IPR029067 -
Pte15g01090 452 FunFam Transitional endoplasmic reticulum ATPase 44 212 - -
Pte15g01090 452 Gene3D - 214 304 - -
Pte15g01090 452 Gene3D - 48 212 IPR027417 -
Pte15g01090 452 CDD RecA-like_CDC48_r1-like 47 212 - -
Pte15g01090 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 427 IPR027417 -
Pte15g01090 452 ProSitePatterns AAA-protein family signature. 183 201 IPR003960 GO:0005524|GO:0016887
Pte15g01090 452 Gene3D - 305 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01090 Pte-Chr15 8160795 8162585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01090 285 426 Calmodulin-binding Proteins AT3G56690 49.296 1.30e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01090 K13525 - gmx:547850 842.032