Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01088 ATGGGGCGAGCTCCTTGCTGCGACAAGGCTAATGTGAAGAAAGGACCTTGGTCACCTGAAGAAGACACCAAGCTAAAGGAATATATAGAGGAGCATGGAACTGGTGGGAACTGGATTGCTCTCCCACAGAAGGCTGGTCTCAAGCGATGTGGGAAAAGTTGCAGGTTAAGATGGCTTAACTATCTCAGGCCAAACATAAAGCATGGAGAATTTTCTGAAGAGGAAGACAGAATCATCTGTAGCCTGTTCGCAAACATAGGGAGCAGTTATGACAGATGGTCAATTATAGCTGCACAGTTGCCAGGTAGGACTGACAATGATATTAAGAACTACTGGAACACCAAGCTCAAAAAGAAGCTCATGGGGGTGTTTCCTTCTTCACAGAGAAAGCCAACCCCGTTTCGATCTACTGATCATCACAATCCACCATGTCCTTATGAGTCTTTGTCATCTTCAATGTACAAAGAATACAACTCTAATTACTACTGCACATCATCGACTATAGGGCATGAAACCATTTCAGTTCCATCGAATTATTCAAACAAGACGAGCTGTTTTGCTACAAATTATATCCCTGAAATGTTGCAGACAAACAAGGATAGTGGTCTGTCTGGTTCCATGCAGATGTACTATTACGCAGCTACAGAAGATAATCTCCTCATGTTTGGAAGCGAAGGAAGCTCTTGTAATTCATCGAATGGGAGCCGCAGTCATATAAGCCATAAAAGAGAGATCAAACGAGAAGATCAAATGGGGTCCCGTCAAAACTCCATGATCACTAATCCGTTTGAAGAAAACCAGAAGTATATCCTTCATGATCATGGCATTGGCAGCATTGATATTTGCACGATTGGCACTGGAAATGAAAATTGGAATGTTAACCATTGGGTGAATATGTCAAATGGTGCTGATCAAAATTTTGGAGAAAACTTTGATTATCATGTTCCTGAGGACATTAAGCAAGTACTGATCAGTAGTACTAACTACAATGATGGCTTCAGTAATACCTTCTTGAAATAA 1020 0.4137 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEEHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLFANIGSSYDRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGVFPSSQRKPTPFRSTDHHNPPCPYESLSSSMYKEYNSNYYCTSSTIGHETISVPSNYSNKTSCFATNYIPEMLQTNKDSGLSGSMQMYYYAATEDNLLMFGSEGSSCNSSNGSRSHISHKREIKREDQMGSRQNSMITNPFEENQKYILHDHGIGSIDICTIGTGNENWNVNHWVNMSNGADQNFGENFDYHVPEDIKQVLISSTNYNDGFSNTFLK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01088 339 CDD SANT 70 116 IPR001005 -
Pte15g01088 339 Gene3D - 7 68 - -
Pte15g01088 339 PANTHER OS09G0431300 PROTEIN 1 270 - -
Pte15g01088 339 SMART sant 67 118 IPR001005 -
Pte15g01088 339 SMART sant 13 64 IPR001005 -
Pte15g01088 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 120 IPR017930 -
Pte15g01088 339 ProSiteProfiles Myb-like domain profile. 63 116 IPR001005 -
Pte15g01088 339 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte15g01088 339 MobiDBLite consensus disorder prediction 237 251 - -
Pte15g01088 339 FunFam Transcription factor RAX3 7 68 - -
Pte15g01088 339 MobiDBLite consensus disorder prediction 231 254 - -
Pte15g01088 339 CDD SANT 16 62 IPR001005 -
Pte15g01088 339 SUPERFAMILY Homeodomain-like 11 112 IPR009057 -
Pte15g01088 339 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte15g01088 339 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pte15g01088 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pte15g01088 339 Gene3D - 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01088 Pte-Chr15 8151325 8153179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01088 1 138 MYB Transcription Factor Family AT5G57620 79.710 1.47e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01088 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01088 K09422 - qsa:O6P43_028421 339.732