Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01081 ATGCTCCCACATTCACTGCGCTCATGTTTCTGTTTCGTAGACAAACCGTTTCTTCTTGCGCGACGACACTCCCGCCGCATTAACTGCCAAAGCACACTACTGTCATTGTCACTCTCACCATTTAATTCAAAGTCAAAACCATTGTCCCCGTGCTTCGTCTTCTCTGATCAGCAGCATTCTCGCACCATCACCATGTCCTCTCGCCCTTCCGCGTTCGATGCCCTTATGTCCGGTGCACGCGCTGCCGCGGCCAAGAACAAACCCCCACAGTCAAAATCATCACCCAAGAAACGAAAAACCCTAGATTCCTCCTCTACCACCAAAGCCACCTTAATCACGAAAATCGATTCGGAACCACAAGGTGAATTGGATTCCAAACCTCAAGAAACGAATGCTGACCAGGATGTCAATGACTGTGCTCCGATTGCGTCGGAGGTGGTCCCGTCTGCCAAGAAGCAGAAGGCGGATACTGTCAAGGAAAAAGTTGTCACTTTGAAGAGCAAGATTTCACAATTGAAGAAGAAGCCTAACGATTTTGATCCTAAATCAGTAGCATCTTGGGAGAAGGGTGAACCTGTGCCTTTTCTATTTCTTGCCTTGGCATTTGATATGATAGACCAAGAATCAGGGCGTATTGTGATAACGGATATTGCGTGTAATATGTTGAGGACTGTTATGTATACCACGCCGGATGACCTCGTTCCTGTAGTATATCTTTCCGCAAACAGCATTTCTCCGCCGCACGAGGGTTTGGAGTTGGGAATTGGGGATGCTTCCATTATTAAGGCGCTTGCTGAGGCATTCGGAAGGACTGAAGCTCAGATCAAATCTCAGTACAAGGAAAAGGGTGATCTGGGCCTTGTTGCTAAAGCCAGCCGTTCATCCCAGTCTATGATGCGTAAGCCTGATCCTTTAACCATTTCAAAGGTGTTTGACACTCTTCGGTCAATTGCCAAGGAATCTGGAAAGGACAGTCAAGATAAAAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCGACAGACTGTGAACCTCAATATTTAATTCGCCTGCTTCAGGCAAAATTGCGCATTGGATTGGCAGAGCAAACTCTATTAGCTGCATTGGGCCAAGCTGCCTCTTTTTTAGAACATTCAAAACCATCTCAAATTGTGTCTCCCATGGAGGAGGCCTCGAAGATTGTAAAACAAGTCTATTCCGTTCTACCGTCCTACGATAAAATAGTCCCTGCCCTTTTAGCCAGTGGCGTTTGGGATCTTCCAAAGAGGTGCGACTTTACTCTTGGTGTTCCCATTGGACCCATGCTGGCAAAATCCACCAAGAGTATATCCGAAATTCTGGACAAATTCCAGGACATGGAATTTACATGTGAATACAAGTACGATGGTGAGCGTGCCCAGATTCATTACATGGAGAATGGTTCAGTTGAGATTTACAGTCGAAATGCTGAGTGGAATACTGGAAAGTTTCCTGACGTGGTTGCTGCAGTCCCCAGGTTTAAGAAGCCATCTGTATCTTCATTTGTTATTGATTGTGAACTTGTTGCATATGACCGTAAAAAGCAGAAAATTCTACCATTCCAGGTTCTCAGTACTCGAGCTCGAAAAAACGTGGTTGCGAGTGATATAAAAGTTGAAGTTTGTGTATTTGCTTTTGACATATTATACCTTAATGGCCAACCACTCATTCAGGAGCAACTGAAAGTCCGTAGGGAGAGCCTCTATGACTCATTCGAGGAAGAAACTGGAGTTTTTCAGTTTGCGACAGCTATAACATCAAATGATGTTGAGGCAATACAAAAGTTTCTTGATGATTCTGTCGAAGCTAGTTGTGAGGGTTTAATCATCAAAACATTGGATAGGGATGCCACTTATGAACCTTCCAAGAGATCAAACAATTGGCTAAAATTGAAGAAGGACTATATAGAGAATATTGGAGACTCGTTAGATTTGGTACCAATAGCTGCATTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCATTTCTTCTTGCTTGCTATGATAGCAATAATGAAGAATACCAAAGTATCTGTAAGATAGGCACTGGACTTTCTGAAGCATTGCTTGAAGAACGTTCTGCCAGTCTTCGTTCTAAATTGATCTCCATGCCAAAGCCATATTACCGCACAAGAATCAATCCTGCTCCTGACGTCTGGTTTGAACCCTCTGAGGTCTGGGAAGTGAAAGCTGCAGATTTGACCATTAGCCCTGTTCATCGCGCTGCTGTGGGCATAGTAGATGCAGACAAGGGAATATCACTCCGCTTTCCACGATATGTACGGATTCGGGAAGACAAAACTCCTGAAGAGGCCTCAACATCAGATCAGGTTGCTGAAATGTACAACGCTCAAAATCACAACCTCCCTAACTACCAAGATGAAGTTGAAGATGATTGA 2421 0.4436 MLPHSLRSCFCFVDKPFLLARRHSRRINCQSTLLSLSLSPFNSKSKPLSPCFVFSDQQHSRTITMSSRPSAFDALMSGARAAAAKNKPPQSKSSPKKRKTLDSSSTTKATLITKIDSEPQGELDSKPQETNADQDVNDCAPIASEVVPSAKKQKADTVKEKVVTLKSKISQLKKKPNDFDPKSVASWEKGEPVPFLFLALAFDMIDQESGRIVITDIACNMLRTVMYTTPDDLVPVVYLSANSISPPHEGLELGIGDASIIKALAEAFGRTEAQIKSQYKEKGDLGLVAKASRSSQSMMRKPDPLTISKVFDTLRSIAKESGKDSQDKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGLAEQTLLAALGQAASFLEHSKPSQIVSPMEEASKIVKQVYSVLPSYDKIVPALLASGVWDLPKRCDFTLGVPIGPMLAKSTKSISEILDKFQDMEFTCEYKYDGERAQIHYMENGSVEIYSRNAEWNTGKFPDVVAAVPRFKKPSVSSFVIDCELVAYDRKKQKILPFQVLSTRARKNVVASDIKVEVCVFAFDILYLNGQPLIQEQLKVRRESLYDSFEEETGVFQFATAITSNDVEAIQKFLDDSVEASCEGLIIKTLDRDATYEPSKRSNNWLKLKKDYIENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEYQSICKIGTGLSEALLEERSASLRSKLISMPKPYYRTRINPAPDVWFEPSEVWEVKAADLTISPVHRAAVGIVDADKGISLRFPRYVRIREDKTPEEASTSDQVAEMYNAQNHNLPNYQDEVEDD* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01081 806 ProSitePatterns ATP-dependent DNA ligase signature 2. 612 638 IPR016059 GO:0003909
Pte15g01081 806 ProSiteProfiles ATP-dependent DNA ligase family profile. 540 676 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pte15g01081 806 Pfam ATP dependent DNA ligase domain 434 638 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pte15g01081 806 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 88 795 - -
Pte15g01081 806 Gene3D DNA ligase/mRNA capping enzyme 463 588 - -
Pte15g01081 806 Pfam DNA ligase N terminus 194 369 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte15g01081 806 SUPERFAMILY Nucleic acid-binding proteins 646 792 IPR012340 -
Pte15g01081 806 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 458 466 IPR016059 GO:0003909
Pte15g01081 806 Gene3D - 643 802 IPR012340 -
Pte15g01081 806 FunFam DNA ligase 643 802 - -
Pte15g01081 806 FunFam DNA ligase 434 640 - -
Pte15g01081 806 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 426 644 - -
Pte15g01081 806 Coils Coil 155 175 - -
Pte15g01081 806 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 176 424 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte15g01081 806 NCBIfam ATP-dependent DNA ligase 252 789 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pte15g01081 806 Gene3D - 444 642 - -
Pte15g01081 806 FunFam DNA ligase 171 436 - -
Pte15g01081 806 Pfam ATP dependent DNA ligase C terminal region 663 774 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pte15g01081 806 CDD OBF_DNA_ligase_I 646 791 - -
Pte15g01081 806 Gene3D - 169 436 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte15g01081 806 CDD Adenylation_DNA_ligase_I_Euk 423 641 - -
Pte15g01081 806 MobiDBLite consensus disorder prediction 81 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01081 Pte-Chr15 8102548 8110118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01081 18 807 Core DNA Replication Machinery Family AT1G08130 65.452 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01081 K10747 - qsa:O6P43_028431 1101.66