Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01080 ATGGAAGTCGGCATAGAAGAATTTGTGGGATCGTCTAGTAAAGATGTGAGCCAAATTGCCAAAGGGAAAAGAGCCAAGAGGTTAAGGTTGCCGTCCCCTAATGGTGGCAACAACACCAAGATGAGTTGTAGCTCCTCAAGTACTGCTGCTGGTGCTGGTGATTGTGTTTCGTTTTCTTCCACAGCAACCTGCAATTATGAGAGCACTGAAGAAGAGGAGGACATGGCAAACTGCTTGATTCTCTTGGCTCAAGGTGATTCGCAAAAGCAAACCGCTCAAATGGGTGGCAACAAGACAGAGAGGTTTGGCAGTAGAAGATTCGCTAATATAGCCACAAGTACAGCTTGCAAGACGGGTATCTTTGTCTATGAGTGCAAAACATGTAACCGTGCTTTTCCTTCATTTCAAGCACTTGGAGGCCACAGGGCAAGTCACAAAAAACCGAAGTTTGAAGAGAAGAAGTTATCACCTACACAACCATCCACTGATGATCATGAAAATTTGGAATTAGAAGGTGGGCAGGTTAAGCATGTCAAAATGAACACAAGCACTCCTCCGCGAACTCCTGTTCGGTTGTCTGCAGACGTTATTGCAGGAATCAATCAGAATAGGGCAAGGATTCACGAGTGTTCAATATGTGGATCAGAATTTTCATCTGGGCAAGCATTGGGTGGACACATGAGGCGGCATAGGGCAGCAACAAGCACCGGTCAACTGGTGGAGTTGAACGTCCATAGTAACCAAAGCAATGGTACTGCTAGTGCTAACCCCATAAAGATCAAGTCAAGAAACACTCTGGAGTTGGATCTAAACCTTCCTGCACCTGAAGATGACACCCGGGATTCGACGTTTCAGTACGCTTCAACACAACGATCACTGGTCCTGTCTGCCCCTGCCTTGGTAGATTGCCATTATTGA 918 0.4619 MEVGIEEFVGSSSKDVSQIAKGKRAKRLRLPSPNGGNNTKMSCSSSSTAAGAGDCVSFSSTATCNYESTEEEEDMANCLILLAQGDSQKQTAQMGGNKTERFGSRRFANIATSTACKTGIFVYECKTCNRAFPSFQALGGHRASHKKPKFEEKKLSPTQPSTDDHENLELEGGQVKHVKMNTSTPPRTPVRLSADVIAGINQNRARIHECSICGSEFSSGQALGGHMRRHRAATSTGQLVELNVHSNQSNGTASANPIKIKSRNTLELDLNLPAPEDDTRDSTFQYASTQRSLVLSAPALVDCHY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01080 305 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Pte15g01080 305 Gene3D Classic Zinc Finger 120 230 - -
Pte15g01080 305 PANTHER ZINC FINGER PROTEIN ZAT5 61 281 - -
Pte15g01080 305 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Pte15g01080 305 MobiDBLite consensus disorder prediction 140 172 - -
Pte15g01080 305 SUPERFAMILY beta-beta-alpha zinc fingers 122 230 IPR036236 -
Pte15g01080 305 SMART c2h2final6 208 230 IPR013087 -
Pte15g01080 305 SMART c2h2final6 123 145 IPR013087 -
Pte15g01080 305 MobiDBLite consensus disorder prediction 20 43 - -
Pte15g01080 305 MobiDBLite consensus disorder prediction 144 172 - -
Pte15g01080 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Pte15g01080 305 Pfam C2H2-type zinc finger 208 232 - -
Pte15g01080 305 Pfam C2H2-type zinc finger 122 148 - -
Pte15g01080 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01080 Pte-Chr15 8089463 8091495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01080 70 306 C2H2 Transcription Factor Family AT5G04390 41.197 2.02e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01080 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01080 - - qsa:O6P43_000387 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01589 18 27369810 27371376 Pte15g01080 15 8089463 8091495 RCT
Pte15g01080 15 8089463 8091495 Pte18g01589 18 27369810 27371376 RCT
Pte15g01080 15 8089463 8091495 Pte15g01080 15 8089463 8091495 RCT
Pte15g00476 15 3408114 3409517 Pte15g01080 15 8089463 8091495 RCT
Pte15g01080 15 8089463 8091495 Pte15g00476 15 3408114 3409517 RCT