Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01072 ATGATGCCGAGGTTGTCGTCTTGTTTTCCAAATGTCTCTCAAGCCCTACAAATGTTCCCTGCAGTGTCAGAAGATCAGTTGCTTTCTGGATCCTCGTCTCTTCCAGCAACCTACGCAGCATCTGATCACTCACAGTATTCTACCTCTCTCCTTGATAATCTCTCAATACTTAAAGACAAGATGAATCAGGTGCAGTCATTAGTGAGTATTCTGGTTTCTTCATATCAAACCCAACCGGATCAGTCAACATCTTTGGCTATGACCAACATGAATTCAGTAATTCAAGAGATCATAGTGGCTGCTTCTTCGATGATGCTCACTTGCCAACATATGGCATTACTTGGCTCCTCTTCAGTTGCCACTACCACTGAGGAATTCAACCAGCCGCAGCATCATATTAAGCTTTCATCCGATAATAGATTATCTCAAACCAACTTGAATAGTCGTGTAGGAGAAGCATCAGGGCAAGATAGTGGACATGGCTTCTTTTGTAGAGAAACCCTTGATTGGTTTGATGAAAACTATCCCATTAGTGACGTTAAGAATGACGATCGAAATGTTGTAGTCAATGAAACCAGGATCAGTAGCAGAATTGGAAGAAGAGAATTAAAGCCCGCAGCTGCTGACGATGCAAGTGAAGAACCAAATGGGATTTCATCAAAAGATTGTGACATCATAGAACTGGATGCCGGAGATTTGTTGGCTAAATACACACATTACTGCATAGTTTGTGGAAAAGGGTTTAAGCGCGATGCGAATTTGAGAATGCACATGAGGGCTCATGGGGATAAGTATAAAACTAATGCTGCATTGAGCAACCCCATGAAACATAGTGGTGGCTTCGGTGGGAACGAAGACTATTCGACAACAGTGCCAAAGAAATATTCATGCCCACAAGAAGGGTGTAGATGGAACAAAAATCATGCCAAGTTTCAACCTTTGAAATCCATTATTTGTGTGAAGAATCACTACAAAAGAAGCCACTGCCCCAAAATGTATGTCTGCAAGAGGTGCAATCAGAAGCAATTCTCGGTGCTCTCTGATCTGCGGACTCATGAAAAACATTGTGGGGACCATAAATGGCAGTGTTCTTGTGGTACTACATTTTCCAGGAAGGATAAGCTTATGGGTCATTGTGCTTTGTTCGTTGGTCACACTCCAGTCAGCACTTCGTCAAGTTCCGGAAAAATTGAACAATAG 1200 0.4233 MMPRLSSCFPNVSQALQMFPAVSEDQLLSGSSSLPATYAASDHSQYSTSLLDNLSILKDKMNQVQSLVSILVSSYQTQPDQSTSLAMTNMNSVIQEIIVAASSMMLTCQHMALLGSSSVATTTEEFNQPQHHIKLSSDNRLSQTNLNSRVGEASGQDSGHGFFCRETLDWFDENYPISDVKNDDRNVVVNETRISSRIGRRELKPAAADDASEEPNGISSKDCDIIELDAGDLLAKYTHYCIVCGKGFKRDANLRMHMRAHGDKYKTNAALSNPMKHSGGFGGNEDYSTTVPKKYSCPQEGCRWNKNHAKFQPLKSIICVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDHKWQCSCGTTFSRKDKLMGHCALFVGHTPVSTSSSSGKIEQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01072 399 Gene3D Classic Zinc Finger 237 266 - -
Pte15g01072 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Pte15g01072 399 SMART c2h2final6 333 359 IPR013087 -
Pte15g01072 399 SMART c2h2final6 239 261 IPR013087 -
Pte15g01072 399 SMART c2h2final6 295 328 IPR013087 -
Pte15g01072 399 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Pte15g01072 399 SUPERFAMILY beta-beta-alpha zinc fingers 237 264 IPR036236 -
Pte15g01072 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 42 391 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01072 Pte-Chr15 7994735 7995934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01072 47 392 C2H2 Transcription Factor Family AT5G22890 48.626 1.35e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01072 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01072 - - dzi:111302118 434.106