Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01023 ATGGGGTTGAGGGAATATTGCAATGTAGAAGACAAGAATATGAGCTTTCACACAGCAACTTTCATTGAATGGCTCAAGCCATCATCTTCTCCTCCTTCTCCATCTGTGACTTCATTATCATCATCTTCTCCTTCACTTTTTTCTGCAATACATAGACAAGAGTTTGTTAGAGAGACTATTCAGTTTTTGCCAGTTACAACAAGTGATTCAAGAGATTTGAAGCCTTCGAAGGAGAAAAGTGACGTGGTCAGGCAAAATGAATTTCCTGGAGTTAAATTGGAAGAGAAGCCTGCAGAGCAAGTCACTGTAGCCCTCCACATTGGCTTACCTAACACTGACGATCGTGATATCACGAAGAAAGTGCTTGATGTCAAGGAAGAAGAACCAGTTAAAAGAAGCACTAATATTGGTTATTCTTTCAACTCAGAGCGGAGATTTTGGATCCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGTAGCAAGACTTTCAATAGGTATAATAACATGCAGATGCACATGTGGGGCCATGGTTCTGAATTTAGGAAGGGGCCGGATTCACTCAAGGGTACACAACCAGCGGCAATGCTGAGGCTACCTTGCTACTGCTGCGCTCAAGGTTGCAAGAATAACATTAACCACCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACGCACTACAAAAGGAAGCATGGAGCAAAGCCATTCACGTGCAGGAAATGTGTAAAAGCATTTGCGGTGAAAGGAGATTGGAGGACACATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACCTGTGGTTCAGATTTCAAACACAAGAGATCACTCAAAGACCATATTAGATCCTTCGGGAACGGGCACTCACCCCATCCTTCTCTTGAAGGTTTTGAAGAAGACAAAGAATGCATTACCGGATCGGAGGATGAAGCTACTAATTATACCCTCGATGATTACAGCAAGTAA 990 0.4293 MGLREYCNVEDKNMSFHTATFIEWLKPSSSPPSPSVTSLSSSSPSLFSAIHRQEFVRETIQFLPVTTSDSRDLKPSKEKSDVVRQNEFPGVKLEEKPAEQVTVALHIGLPNTDDRDITKKVLDVKEEEPVKRSTNIGYSFNSERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCVKAFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHSPHPSLEGFEEDKECITGSEDEATNYTLDDYSK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01023 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Pte15g01023 329 SUPERFAMILY beta-beta-alpha zinc fingers 147 184 IPR036236 -
Pte15g01023 329 SUPERFAMILY beta-beta-alpha zinc fingers 230 265 IPR036236 -
Pte15g01023 329 Gene3D Classic Zinc Finger 241 301 - -
Pte15g01023 329 SMART c2h2final6 208 240 IPR013087 -
Pte15g01023 329 SMART c2h2final6 161 183 IPR013087 -
Pte15g01023 329 SMART c2h2final6 245 265 IPR013087 -
Pte15g01023 329 FunFam Zinc finger protein WIP2 214 296 - -
Pte15g01023 329 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Pte15g01023 329 Gene3D Classic Zinc Finger 160 183 - -
Pte15g01023 329 PANTHER ZINC FINGER PROTEIN WIP2 23 316 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01023 Pte-Chr15 7582390 7585303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01023 10 313 C2H2 Transcription Factor Family AT1G08290 56.647 1.36e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01023 - - gmx:100819306 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01023 15 7582390 7585303 Pte15g01023 15 7582390 7585303 RCT