Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01016 ATGAGTAAGCTTCAGAGCGATGCTTTAAGAGAAGCTATAACTGGAATCACGACTGATTGCAAGGAGAAGAAAAAGAACTTTGTCGAGACCATCGAGCTTCAAATCGGATTAAAGAACTATGACCCTCAAAAGGATAAGAGGTTTAGTGGCTCCGTCAAACTGCCACATATCCCTCGGCCAAAGATGAAAGTTTGCATGCTTGGTGATGCGCAACATGTTGAAGAGGCTGAGAAAATAGGTTTGGACTACATGGATGTTGAGGGATTGAAGAAGCTCAATAAAAACAAGAAGCTTGTGAAGAAGCTCGCCAAAAAGTACCATGCTTTCTTGGCTTCTGAGGCTGTCATTAAGCAGATTCCACGTCTCTTGGGTCCTGGTCTCAACAAAGCAGGCAAGTTTCCCACTCTTGTGACCCATCAGGAATCTTTGGAGAGCAAGGTCAATGAGACTAAGGCTATGGTTAAGTTCCAGCTGAAGAAGGTTCTGTGTATGGGAGTTGCCGTTGGCAATGTTGCTATGGAAGAAAAACAAATCTTCCAAAACGTGCAAATGAGTGTCAACTTCCTCGTCTCCCTTCTGAAGAAGAACTGGCAAAATTGTATCATTCCATTACAAGTGCCTGCTCGAGTCTATGGCCTCAAATGTGCAGTTCGCATTGCTAACCATGCTTTGATTTCCACTTCAATTGCAGGTGCGGTGTTTGTACCTGAAGAGTACGATGGGAAAACCATATCGGATCTTTTAACAATGTTCTCGAATGGAATTGGATTTTATCATCTGTTTTGTTTTTAG 792 0.428 MSKLQSDALREAITGITTDCKEKKKNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQNVQMSVNFLVSLLKKNWQNCIIPLQVPARVYGLKCAVRIANHALISTSIAGAVFVPEEYDGKTISDLLTMFSNGIGFYHLFCF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01016 263 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 191 - -
Pte15g01016 263 FunFam Ribosomal protein 137 210 - -
Pte15g01016 263 Gene3D - 22 199 - -
Pte15g01016 263 FunFam Ribosomal protein L10a 1 119 - -
Pte15g01016 263 SUPERFAMILY Ribosomal protein L1 21 199 IPR023674 -
Pte15g01016 263 CDD Ribosomal_L1 9 199 IPR028364 -
Pte15g01016 263 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Pte15g01016 263 Gene3D - 65 154 IPR016095 -
Pte15g01016 263 FunFam Ribosomal protein 65 154 - -
Pte15g01016 263 Pfam Ribosomal protein L1p/L10e family 21 199 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01016 Pte-Chr15 7507712 7510167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01016 1 199 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 90.452 1.76e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01016 K02865 - csin:114273446 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01016 15 7507712 7510167 Pte15g01016 15 7507712 7510167 RCT