Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01008 ATGGAGGACGAGGAATATGCACCTGGTTTTCGATTTTACCCAACAGAGGAAGAGCTGGTGGGTTTCTATCTTCAAAAGAAGCTAGAAGGAATCACTACGACTCGGATGGATCGTGTAATTCCTACCATCGACATCTACAGCGTGGAGCCTTGGGACCTTCCACAACTTGCAGGAGAGAGTTGTCGTGCAGATAGAGAGCAATGGTTTTACTTCACACCAAGACAAGAGAAAGAAACCAAAGGAGGAAGACCAAGCAGAAGCACTGCCACAGGATACTGGAAAGCCACAGGTTCTCCAGGATACGTCTACTCGTCTGATAAGAAGATCATTGGAGTGAAGAAAACCATGGTCTTCTACAAGGGGAGAGCTCCACATGGAAGGAAAACCAAGTGGAAGATGCATGAGTATAGAGCTAATGCATCCATGCCTGACCAATCAACCAGTACTCCTGTCCCCAAGTTGAGGGATGAATTCAGTTTGTGCCGAGTTTATGTGATATCGGGAACTTTTCAAGCATTTGATCGCCGGCCAACACCGGAAACTACGTCAACTAAGTCATCAGATGCTCATCTGTACAATGATGTTGCAAGTGCCCAGGATACTCCAATGGTGGAGAAATCAAACTCATCTGATAATTCTCACTCGGGGGGCGAGGGCGGTCCATTTTTGAATGTCCTTGATTTTGGTGGGAGTAGTACTGCTACTAACTGGGACATACCGCCAAGTTTAGAACAACCCTTTTGGGAATGGGAACAACTCAACTGGCCCTAG 771 0.4669 MEDEEYAPGFRFYPTEEELVGFYLQKKLEGITTTRMDRVIPTIDIYSVEPWDLPQLAGESCRADREQWFYFTPRQEKETKGGRPSRSTATGYWKATGSPGYVYSSDKKIIGVKKTMVFYKGRAPHGRKTKWKMHEYRANASMPDQSTSTPVPKLRDEFSLCRVYVISGTFQAFDRRPTPETTSTKSSDAHLYNDVASAQDTPMVEKSNSSDNSHSGGEGGPFLNVLDFGGSSTATNWDIPPSLEQPFWEWEQLNWP* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01008 256 Gene3D NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Pte15g01008 256 MobiDBLite consensus disorder prediction 198 217 - -
Pte15g01008 256 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Pte15g01008 256 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 199 - -
Pte15g01008 256 MobiDBLite consensus disorder prediction 198 225 - -
Pte15g01008 256 ProSiteProfiles NAC domain profile. 6 166 IPR003441 GO:0003677|GO:0006355
Pte15g01008 256 SUPERFAMILY NAC domain 5 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01008 Pte-Chr15 7457642 7459254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01008 4 257 NAC Transcription Factor Family AT5G22380 53.150 4.73e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte15g01008 NAM 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01008 - - qsu:112025473 318.546