Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00996 ATGTCTGGTGCGGAGGCTCCTAACTCCTCGGTTCAGCCCTCAAAGCAGATCATGCTCCCTAAACGGCAACTGCCTTTTTCTTCGATGAAGCCGCCGTTTGTAGCTCCGGGAGATTATCATCACTTCCCACTAGATAATCATCAAGTCGGTGAACAAATCGCAGAGGCCATAGTTGTTAAATCACCGCAATTGAAGCGGAAGAATAATGCAGCAGATATGGAAGCTGATTCTGGTGATCGGGTGATTGTTCCTGGCTTAACAGATGTATTAAATGGTCCCTTTCAGACACCAGTTTCTGGAAAGGCTGCTAAGGGAAGTAAAGGTTCAAGAGTTACAAAGTGCAGTAGAGCTGGACCTAAAACTCCAGCTTCAAACACAGGATCTCCATCAGGCAACAATCTCACTCCAGCTGGTTCTTGTCGCTACGATAGCTCCCTAGGTCTATTGACAAAGAAGTTCATAAATTTGATCAAGCAAGCAGAAGATGGTATATTAGATCTCAATAAAGCTGCCGGTACATTAGAGGTGCAAAAGAGGAGGATATACGATATAACAAATGTTCTTGAAGGAATTGGTCTCATAGAAAAAAAGCTCAAAAACAGAATCCAGTGGAAGGGGCTTGATGTTTCAAGACCAGGGGAGTCTGACAACAATTATAATAGTTTACAGGCTGAAGTTGAAAACCTCACAATGGAGGAACGCAGATTAGATGAACAAACAAGAGAAATGCAAGAAAGATTACGAGACCTCAGTGAAAATGAAAACAATCAAAAGTGGCTTTTTGTCACTGAGGAAGACATAAAGAGCTTGCCATGCTTCCAGAATGAAACCTTAATAGCAATTAAAGCACCTCATGGCACCACAATGGAGGTTCCTGATCCTGATGAGACTGCTGACTATCCCCAGAGGAAATACAGGATTGTTTTGAGAAGTACAATGGGTCCTATCGATGTTTACCTTGTCAGTCAATTCGAAGAGAAGTTTGAGGAAATTAATGGCTTTGAAATGCCACCAAACCCTCCACCTAGTTCAGAAGCTAATGAGGATCAAGTAGCCGTGGTCAGGGAGGAGAGAGGAAAGGCCGTAGAAATGCAGGGACATGATGTCCATGGAACATGTTCTGATTTGAATGCATCACAGGATTTTGTCAGTGGAATCATGAAGATCGTTCCATCCGATGTTGATAGTAATGCTGATTACTGGCTTTTGTCAGATGATGCCGTTGTTAGCATCACTGACATTTGGAATACAGAGCCTGGAATTGAATGGAATGGACTAGGTACTATTCATGAAGATTATAACACGGCTGGTACTATCCATGAAGATTATAACATGGCAACTGTCAACGCACCTCTGCCCCAAACTCCTCCCCCCAGCACTAGTGAAGTGCCTCCCGCTGCTAATCCAAAAAGGATTTAA 1419 0.432 MSGAEAPNSSVQPSKQIMLPKRQLPFSSMKPPFVAPGDYHHFPLDNHQVGEQIAEAIVVKSPQLKRKNNAADMEADSGDRVIVPGLTDVLNGPFQTPVSGKAAKGSKGSRVTKCSRAGPKTPASNTGSPSGNNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGILDLNKAAGTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGESDNNYNSLQAEVENLTMEERRLDEQTREMQERLRDLSENENNQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTMEVPDPDETADYPQRKYRIVLRSTMGPIDVYLVSQFEEKFEEINGFEMPPNPPPSSEANEDQVAVVREERGKAVEMQGHDVHGTCSDLNASQDFVSGIMKIVPSDVDSNADYWLLSDDAVVSITDIWNTEPGIEWNGLGTIHEDYNTAGTIHEDYNMATVNAPLPQTPPPSTSEVPPAANPKRI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00996 472 CDD E2F_DD 217 323 IPR032198 GO:0046983
Pte15g00996 472 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Pte15g00996 472 Gene3D - 214 323 - -
Pte15g00996 472 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Pte15g00996 472 Coils Coil 219 256 - -
Pte15g00996 472 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Pte15g00996 472 PANTHER TRANSCRIPTION FACTOR E2F 91 419 IPR015633 GO:0000978|GO:0006357
Pte15g00996 472 SUPERFAMILY E2F-DP heterodimerization region 218 323 IPR037241 -
Pte15g00996 472 FunFam E2F transcription factor 1 135 208 - -
Pte15g00996 472 Gene3D - 135 208 IPR036388 -
Pte15g00996 472 MobiDBLite consensus disorder prediction 449 472 - -
Pte15g00996 472 MobiDBLite consensus disorder prediction 97 136 - -
Pte15g00996 472 MobiDBLite consensus disorder prediction 118 136 - -
Pte15g00996 472 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00996 Pte-Chr15 7399203 7404203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00996 21 433 E2F-DP Transcription Factor Family AT5G22220 56.621 2.51e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte15g00996 E2F_CC-MB 6.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00996 K06620 - cave:132163587 659.833