Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00992 ATGGAGGAGATAGATCTTCCCTCCCATTTTCTCTGCCCCATTTCCTTGCAGCTGATGAGAGACCCCGTCACAGTTTCAACAGGAATCACTTACGATAGGGATAGTATTGAGAGATGGTTATTCTCATTCAGCAATAACACTTGCCCCATCACAAAGCAGACAGTAACGGATACAGAGCTCACACCGAACCACACTCTTCGACGGTTGATTCAAGCATGGTGCACCCTCCATTCTTCATCTGGCATAGAACGTATTCCAACACCAAGGCCTCCTGTTGACACAACCCAGATCGTCAAACTTCTCAACGAAGCTAAGAAGTTCCCTGATGCACAACTCAAATGCCTAAGAAGGCTGCGATCTATTGTATTTGAAAGCGAAAGGAACCGGCGCTCTGTGGAGGCTGCTGGGGGAATAGAATTCTTGGCTTCTATGGTCAACAATGACGATTTGGACGTAAGTGAAACAGCCATTGAAGCCCTCTTCAATCTTAAGCTTTCTGAAGCTCACATGAAAGGCCTCTTGAAAAGCAATAGCTTTGAATTTGTAGAATCTTTGGTGCAAGTTCTGAGGAATGGAAACTACCAATCTCGAGCTTATGCCACAATGCTGTTGAAGTCATCTTTTGAAGTGGCTGATCCAAGCCAGTTGATCAATGTCCAAACTGATTTGTTTGTCGAGGTAGTAAGAGTGTTACATGATCAAATTTCCCATCCATCTTGCAAGGCTGCACTGAAGCTTCTTGTAGAGCTTTGTCCCTGGGGAAGAAACAGAATCAAAGCAGTTGAAGGTGGTGCAGTTTCTGTCCTAGTAGAGCTTCTTCTAGACACATCTGATAGAAGAACATGTGAACTCATACTCGTTGCTTTGGACCCAATCTGTGGATGTGCTGAAGGGAGAGCAGAGATGTTGAAGCATGGAGCAGGTCTGGCAATTGTGTCCAAGAAAATCCTTCGAGTTTCTCATGTCGCAAGTGGTAAAGCAGTTAGGATTTTGTCCTCCATATGCAGGCACTCCGGGAACTCTTGGGTGCTTCAGGAAATGTTGCAAGTTGGAGCGGTGGCAAAGCTGTGTTTGGTGCTTCAAACGGATGAGACTTCAAAGACAAAGGAGAGAGCAAAGGAGATCCTCAAGTTGCATTCCAGGGTTTGGAGAACCTCCTCTTGTATTCCATCACATCTAATTTCTTCTTATCCTTAA 1197 0.4503 MEEIDLPSHFLCPISLQLMRDPVTVSTGITYDRDSIERWLFSFSNNTCPITKQTVTDTELTPNHTLRRLIQAWCTLHSSSGIERIPTPRPPVDTTQIVKLLNEAKKFPDAQLKCLRRLRSIVFESERNRRSVEAAGGIEFLASMVNNDDLDVSETAIEALFNLKLSEAHMKGLLKSNSFEFVESLVQVLRNGNYQSRAYATMLLKSSFEVADPSQLINVQTDLFVEVVRVLHDQISHPSCKAALKLLVELCPWGRNRIKAVEGGAVSVLVELLLDTSDRRTCELILVALDPICGCAEGRAEMLKHGAGLAIVSKKILRVSHVASGKAVRILSSICRHSGNSWVLQEMLQVGAVAKLCLVLQTDETSKTKERAKEILKLHSRVWRTSSCIPSHLISSYP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00992 398 SUPERFAMILY ARM repeat 96 377 IPR016024 -
Pte15g00992 398 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Pte15g00992 398 CDD RING-Ubox_PUB 7 60 IPR045210 -
Pte15g00992 398 SUPERFAMILY RING/U-box 3 80 - -
Pte15g00992 398 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Pte15g00992 398 PANTHER WDSAM1 PROTEIN 3 390 IPR045185 GO:0061630
Pte15g00992 398 Pfam U-box domain 7 78 IPR003613 GO:0004842|GO:0016567
Pte15g00992 398 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Pte15g00992 398 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 178 IPR000225 GO:0005515
Pte15g00992 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pte15g00992 398 Gene3D - 88 387 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00992 Pte-Chr15 7342694 7344003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00992 2 398 U-box Gene Family AT2G35930 54.591 2.31e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00992 - - qsu:112009329 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00992 15 7342694 7344003 Pte15g00992 15 7342694 7344003 RCT