Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00980 ATGGATCCCGAATTGATGAGACTCGCTCAGGAGCAGATGAGTCGTATGTCTCCCGCCGAGTTAGCGCGGATCCAGCAACAGATGATGTCAAATCCAGAACTGTTAAAGATGGCCACTGAAAGTATGAAGAATTTGAGTTCCGAAGACTTCAAATTTGCTGCTGAACAGCTAAAGGGTACCCGCCCAGAGGAAATGGCTGAGATTGGTGAGAAGATAGCTAATGCATCACGGGAGGAGATTGCAGCAATGCGTGCCCGCGCTGATGCACACATCAATTATCAATTAAGTGCTGCTGAGATGCTAAAGAAGCAGGGGAACCAGCTCCACAATCAGGGAAAGTTTAATGATGCCGCACAGAAGTATTTGCTTGCAAAGGAAAACCTGACAAGCATTCCATCCCCCAAAGCAAGGATTCTGCTTATGGCATGTTCACTCAACCTGATGTCATGTTATCTGAAGACCAGAAAGTACGATGAATGCATTAAAGAAGGGTCTGAGGTTTTGACTTACGATGCAAGGAACATAAAGGCTCTTTACCGAAGAGGTCAAGCCTATAAAGAATTAGGCCGACTAGAGAATGCTGTTGCTGATTTAAGTTGGGCAAGTGAACTGTCCCCTGATGACGACACCATTGTGGACACTTTGAGGGACGCAAAGGAAAAGTTAATTAAGGAAGGCAGTATGCCTGAACGAATTGTTGAAGGAATAACCGAAGAAGTAGCGAATATGCCTTCTGGCAGAAATATGAGCTCACATGTGCAACAAACCACAGAACAGAAAATGGAAGTGGACAGGCCTTTGGAAAATGTTCTGATGGAACAACCAAAAGAAACTGATAGACCTTCAACAAGCAACAACATGAACCTGAAATCAAATTATTCGGAGAGTATACAAGCAATGAGAAATGACCCAGAAGCTATCAGGTCATTTCAAAACTTTGTTTCAAATGCGGACCCTTCCACTTTTGCGTCTTTATCTGGAAAGTCTGGAGAGGTGTCCCCTGACATGATAAGGGCTGCCTCAAACATGATGAGCAAGATGTCGCCAGTAGAGCTTCAGAAAATGCTTGACATGGCATCCTCATTTCAGGGGCAAAATCCATTCTCAGCTGGAAGTTCCCGTAATCCTGGCACTGATATACCTTCTATACCCCCAAACATATCCCCTGATATGATCAAAACAGCAACTGATATGATGAGTAAGATGTCACCAGATGAACTCCAGAACATGCTTCAAATAGCCTCCTCTATGAAAGGGAAGAATTCCGTTCTAAAGGATTCTTTTGTAAATGAGAAGGGACTAAACTCATCGACCACTATGAATTCTTTTGATGCTGAAGGATTCCCTGTTATTAACCATGTTGGAGGGGAATCGAGCTCCTCTCAAGGTGTATTCTCAAACTTGAGTGCCTCTGAACTAAACGTTGCCTCATGTGCTGGTTTGCAAGAGCAAATGAGGAACCAGATGAAAGACCCAGCCATGCGGCAGGTATGTTTTCTTTATCCTATCAAATAA 1515 0.4376 MDPELMRLAQEQMSRMSPAELARIQQQMMSNPELLKMATESMKNLSSEDFKFAAEQLKGTRPEEMAEIGEKIANASREEIAAMRARADAHINYQLSAAEMLKKQGNQLHNQGKFNDAAQKYLLAKENLTSIPSPKARILLMACSLNLMSCYLKTRKYDECIKEGSEVLTYDARNIKALYRRGQAYKELGRLENAVADLSWASELSPDDDTIVDTLRDAKEKLIKEGSMPERIVEGITEEVANMPSGRNMSSHVQQTTEQKMEVDRPLENVLMEQPKETDRPSTSNNMNLKSNYSESIQAMRNDPEAIRSFQNFVSNADPSTFASLSGKSGEVSPDMIRAASNMMSKMSPVELQKMLDMASSFQGQNPFSAGSSRNPGTDIPSIPPNISPDMIKTATDMMSKMSPDELQNMLQIASSMKGKNSVLKDSFVNEKGLNSSTTMNSFDAEGFPVINHVGGESSSSQGVFSNLSASELNVASCAGLQEQMRNQMKDPAMRQVCFLYPIK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00980 504 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 386 497 - -
Pte15g00980 504 SMART tpr_5 141 174 IPR019734 GO:0005515
Pte15g00980 504 SMART tpr_5 175 208 IPR019734 GO:0005515
Pte15g00980 504 SMART tpr_5 98 131 IPR019734 GO:0005515
Pte15g00980 504 Gene3D Tetratricopeptide repeat domain 85 231 IPR011990 GO:0005515
Pte15g00980 504 MobiDBLite consensus disorder prediction 366 386 - -
Pte15g00980 504 SUPERFAMILY TPR-like 91 219 IPR011990 GO:0005515
Pte15g00980 504 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Pte15g00980 504 MobiDBLite consensus disorder prediction 366 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00980 Pte-Chr15 7222017 7227816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00980 88 222 Calmodulin-binding Proteins AT5G48570 33.333 6.64e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00980 - - qsa:O6P43_028643 570.081