LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte15g00973	ATGGAATGGAACAGGGGGCATATTCTAGGCCGGGGTTCATCAGCCGCTGTTTCCCTCGCCAGCCGCAGTGGTGGTGATGTCTGTGCTGTCAAGTCAGCTGAACTATGCCACTCAGAGTTGTTGCAGAGAGAGCGGGAAATGCTTTCTACTTTGAGCTCTCCCTATGTGGTTGATTACAGAGGATGGGATGTCACTAAGGAGAACAACAAGCTCATGTATAATATTTTCATGGAGTACATGGCGGATGGTACTCTAACTGAAGCAATTCGCAGGCACGGTGGTCGGCTTGAAGAGTCCATGATTGCTTTCTATACGAAACAAGTTCTTCAGGGGCTGGAGTACTTACATTCAAATGGAATAGTACATTGTGACATTAAAGGTAGCAATATTTTGATCAGTCAAGAAAACCAAGCTAAAATTGCGGACTTTGGATGTGCTAAGCGGGTTGAGGATTCAGGGAAGGCGGAGCCAATGAGAGGCACGCCCATGTTTATGGCACCAGAGGTGGCGCGCGGCGAAGAACAAGGGCACCCTTGTGATATTTGGGCACTTGGATGTACAGTTATTGAAATGGCAACAGGATCATCACCTTGGACTCATGTTATTGACCCGGTTTCAGTTCTTTATCGGATAGCATATTCCGGCGAATCGCCTGAGATTCCAAGCTTTCTATCCCGCGAAGCAAAGGATTTCTTGGGGAAATGCTTGAAGAGAAATCCAAAGGAGAGGGCGTCGGCCGCCCAACTCATTAGGCATCCGTTTCTCGAGATATACAACGGGAGAACAAAACAGATACATGAATCAAATTCTAGCTCTCCTACAAGTATTCTTGATCAGTGTTTTTGGAATTCAGTCGTGGAATTGGATACGTCATCAAGCAACCTGAATTCTACAAGTTTTGAACATTCTCCCGCTGATAGAGTCCAACAATTGGCCTTCGTTTCAGGTGAACCCAGTTGGACATGGGATGAGAATTGGGTCACTATTAGAGAGGATAGATTTGAGGTTGTAGTTGAAGGGAACACGAATTTACAGACCGAGACAGCTTCAACTAACTGGAGTGTGCAAGAATTGGTAAAAAGCAATAATGATAGCTGTAGAAGAACTACTGGAAATTACATGGGTGATTACAACGGTAGAAAAGTTAAATCTGTAATTAGAACGCTCAAACTTGAGTTTGAGATAGGTATTGATAACATGTTACCTCATTCAATATCAGCATGTTTATAA	1230	0.4415	MEWNRGHILGRGSSAAVSLASRSGGDVCAVKSAELCHSELLQREREMLSTLSSPYVVDYRGWDVTKENNKLMYNIFMEYMADGTLTEAIRRHGGRLEESMIAFYTKQVLQGLEYLHSNGIVHCDIKGSNILISQENQAKIADFGCAKRVEDSGKAEPMRGTPMFMAPEVARGEEQGHPCDIWALGCTVIEMATGSSPWTHVIDPVSVLYRIAYSGESPEIPSFLSREAKDFLGKCLKRNPKERASAAQLIRHPFLEIYNGRTKQIHESNSSSPTSILDQCFWNSVVELDTSSSNLNSTSFEHSPADRVQQLAFVSGEPSWTWDENWVTIREDRFEVVVEGNTNLQTETASTNWSVQELVKSNNDSCRRTTGNYMGDYNGRKVKSVIRTLKLEFEIGIDNMLPHSISACL*	410

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte15g00973	409	FunFam	Mitogen-activated protein kinase kinase kinase 17	2	307	-	-
Pte15g00973	409	Gene3D	Transferase(Phosphotransferase) domain 1	2	319	-	-
Pte15g00973	409	ProSiteProfiles	Protein kinase domain profile.	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte15g00973	409	Pfam	Protein kinase domain	5	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte15g00973	409	SMART	serkin_6	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pte15g00973	409	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	120	132	IPR008271	GO:0004672\|GO:0006468
Pte15g00973	409	CDD	STKc_MAPKKK	2	255	-	-
Pte15g00973	409	SUPERFAMILY	Protein kinase-like (PK-like)	3	289	IPR011009	-
Pte15g00973	409	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	3	316	-	-
Pte15g00973	409	ProSitePatterns	Protein kinases ATP-binding region signature.	9	31	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte15g00973	Pte-Chr15	7174233	7175850	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte15g00973	3	330	MAP Kinase Kinase Kinase	AT5G55090	50.585	1.05e-112	338

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pte15g00973		Pkinase	1.3e-60	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte15g00973	K20716		-	qsa:O6P43_000561	461.455

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Pte15g00973	15	7174233	7175850	Pte9g01130	9	33046537	33047334	RCT
Pte15g00973	15	7174233	7175850	Pte2g00437	2	3397240	3398751	RCT
Pte15g00973	15	7174233	7175850	Pte15g00973	15	7174233	7175850	RCT

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