Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00972 ATGAAGCTTCGTTCTCGCAAACGAGTTCCATCTCCTTCTCTTGATGAAGAAGCTAACGAGGAAAATGGAAGGGGTGGTTCTGTAGAAGATGTACCTAGTTACAATTCATATTATAGTTGTGACGATATTGCCGATGAAGATTTTTATTATTCCTCATCTGATTCTTACTATCAAGATGATGGCGGCCCAAATACTGGCTGTGACGTTATTGATGCAGTGAAAAAGGCTGATGGCAAGAATGCTTCCTCTAGAAGGAAGAGGCAGCCTAAAGCAGGAGATAAAAAAAGAAAGCGAAATGATGAGACTAGGAAGGAATTGTTGTGGGAGAAGTGGGAAGAAGATGATCAGGAATGGATCGACCAGAACTTGTCTGAAGAGGTTGATTATGAAAATCATAATCACTTAATGAACGAAGTTGTAGAGGCACCTTCAGGACTAATTATGCCATTGCTAAGGTATCAAAAGGAATGGCTAGCATGGGCTTTGAAACAAGAAAATTCTGAAATTAGAGGGGGAATTCTTGCAGATGAGATGGGTATGGGGAAGACAATCCAAGCGATAGCTCTTGTTCTGGAAAATCTGGATACAAGAACATGTGACACTTCTCCCTCCTTCAACGAAGCATCCTCAAGCTTACTGGACATCAAAGGAACATTAGTTATTTGTCCAGTGGTTGCTGTCAGTCAGTGGGTTTCTGAGATTGACCGGTTTACTTCAAAAGGAAGCTTGAAGGTTCTGGTTTATCATGGAGCCAAACGTGAGAAGAGTCCAGCACAGTTTACTGGATACGATTTTGTTGTTACTACTTACTCAATTGTTGAATCTGAGTACAGGAGGAACATAATGCCTCCCAAGAAGCAGTGTCCCTACTGTAGCAAATCATTCTACGAAAAGAAGTTGAAAACCCATTGGAGATATTTTTGCGGACCTGATGCGATGAAAACTGAAAAACAGTCGAAGCAGTTCAAAAAATCTCACACAAAATCTTCTAAGAGGAAGATGGTAGATGAGCTTGAGCATTCTGGAGGTATTGAACTTAACTTGTCACGAGGAAAGTCACTTCTACATGCAGTCAAGTGGAATCGCATCATTTTGGATGAGGCACATTACATTAAAGCTAGACACAGCAATACTGCAAAAGCAGTTTTTTCTTTGGAATCTTCCTACAGATGGGCTTTGAGTGGTACTCCACTGCAGAACCGTGTGGGAGAGCTGTACTCTCTGGTCCGCTTCCTTCAAATAGTTCCTTACTCATACTACTTTTGCAAGGACTGTGATTGTAGGACTCTTGATCATAGTTCTTCAAGTGACTGCTCAAACTGTGGACATAGTAGTGTGAGACATTTCTGTTGGTGGAACAGAAATGTCGCTACACCTATACAAAATGACGGGAGTGGCATCAGTGGAAGGAGAGCCATGATATTGCTCACAAAGAAAATATTGAAGAAAATTGTCCTTAGACGGACTAAAAAGGGAAGAGCTGCTGACCTCGCACTTCCTCCTCGAATTATTTCTCTGAGACGAGACGCCCTAGATATTAAGGAGCAAGACTATTATGATTCATTGTACAGTGAAAGTCGGGCACAATTTGATACATATGTTAAGGCAGATACTCTGATGAATAATTATGCTCATGTATTTGATCTTCTCACCAGATTGCGGCAGGCAGTTGATCATCCATACCTCGTTGAATATTCTCAAGCAAAGTTGCTAAGACGTGATACCACCTTTGTTGATAATGGTGAACATGCTTGTGGAATTTGTCATGATCCAGCTGAGGATCCTGTGGTTACATCTTGTGAGCATGTCTTTTGCAAGTCATGTTTAATTGATTATTCTGCCACCCTGGGACGAGTTTCATGCCCCTCATGCTCAACACTACTCACGGTTGATTTAACTTCAAACAAATATGCTGGGAATCAGGCTAGCAAACCAACAATAAAGGGTTTCAGGTCCTCTAGTATCTTAAATAGAATCCAACTTGAAAATTTTCAGAGCAGCACAAAAATAGAGGCTTTGAGGGAAGAGATAAGATTCATGGTTGAAAGAGATGGCTCTGCAAAAGGAATTATTTTCAGCCAGTTCACATCATTTCTGGATCTCATTAATTATTCCCTCCAAAAGTCTGGGATTTCATGCGTTCAATTAGTTGGAAGCATGTCATTGGCATCCCGGGATGCTGCTATCAAAAGATTTTCCGACGATCCCGAGTGCAAAATATTTCTCATGAGCTTGAAAGCTGGAGGCGTAGCTCTCAATTTGACCGTATCATCTCATGTTTTTTTAATGGATCCTTGGTGGAATCCAGCTGTGGAGCGTCAAGCTCAAGATAGAATTCACCGGATAGGTCAATACAAACCAATCAGGATCGTGAGATTTGTGATTGAGAACACAATTGAGGAGAGAATTCTGAAGCTGCAGGAGAAGAAAGAGCTTGTGTTTGAAGGGACGATAGGTGGTTCTTCTGAGGCCCTTGGAAAATTGACTGAAGCAGACTTGAGATTTTTGTTCAACTAG 2517 0.4128 MKLRSRKRVPSPSLDEEANEENGRGGSVEDVPSYNSYYSCDDIADEDFYYSSSDSYYQDDGGPNTGCDVIDAVKKADGKNASSRRKRQPKAGDKKRKRNDETRKELLWEKWEEDDQEWIDQNLSEEVDYENHNHLMNEVVEAPSGLIMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAIALVLENLDTRTCDTSPSFNEASSSLLDIKGTLVICPVVAVSQWVSEIDRFTSKGSLKVLVYHGAKREKSPAQFTGYDFVVTTYSIVESEYRRNIMPPKKQCPYCSKSFYEKKLKTHWRYFCGPDAMKTEKQSKQFKKSHTKSSKRKMVDELEHSGGIELNLSRGKSLLHAVKWNRIILDEAHYIKARHSNTAKAVFSLESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRTLDHSSSSDCSNCGHSSVRHFCWWNRNVATPIQNDGSGISGRRAMILLTKKILKKIVLRRTKKGRAADLALPPRIISLRRDALDIKEQDYYDSLYSESRAQFDTYVKADTLMNNYAHVFDLLTRLRQAVDHPYLVEYSQAKLLRRDTTFVDNGEHACGICHDPAEDPVVTSCEHVFCKSCLIDYSATLGRVSCPSCSTLLTVDLTSNKYAGNQASKPTIKGFRSSSILNRIQLENFQSSTKIEALREEIRFMVERDGSAKGIIFSQFTSFLDLINYSLQKSGISCVQLVGSMSLASRDAAIKRFSDDPECKIFLMSLKAGGVALNLTVSSHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLRFLFN* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00972 838 Pfam Helicase conserved C-terminal domain 669 783 IPR001650 -
Pte15g00972 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 650 IPR013083 -
Pte15g00972 838 ProSiteProfiles Zinc finger RING-type profile. 585 625 IPR001841 -
Pte15g00972 838 SMART ring_2 585 624 IPR001841 -
Pte15g00972 838 CDD SF2_C_SNF 667 794 - -
Pte15g00972 838 Pfam SNF2-related domain 163 563 IPR000330 GO:0005524|GO:0140658
Pte15g00972 838 MobiDBLite consensus disorder prediction 75 99 - -
Pte15g00972 838 Gene3D - 505 837 IPR027417 -
Pte15g00972 838 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 55 838 - -
Pte15g00972 838 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 415 IPR014001 -
Pte15g00972 838 SMART ultradead3 146 433 IPR014001 -
Pte15g00972 838 ProSitePatterns Zinc finger RING-type signature. 600 609 IPR017907 -
Pte15g00972 838 SMART helicmild6 700 783 IPR001650 -
Pte15g00972 838 SUPERFAMILY RING/U-box 573 629 - -
Pte15g00972 838 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 829 IPR001650 -
Pte15g00972 838 Gene3D - 120 288 IPR038718 -
Pte15g00972 838 Gene3D - 295 504 IPR038718 -
Pte15g00972 838 MobiDBLite consensus disorder prediction 1 38 - -
Pte15g00972 838 MobiDBLite consensus disorder prediction 51 70 - -
Pte15g00972 838 Pfam Zinc finger, C3HC4 type (RING finger) 585 624 IPR018957 GO:0046872
Pte15g00972 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 838 IPR027417 -
Pte15g00972 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 464 IPR027417 -
Pte15g00972 838 CDD DEXDc_SHPRH-like 150 427 - -
Pte15g00972 838 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00972 Pte-Chr15 7164906 7173473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00972 1 838 RAD5 or RAD16-like Gene Family AT1G05120 62.777 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte15g00972 SNF2_N 4.4e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00972 K15083 - qsa:O6P43_028664 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00972 15 7164906 7173473 Pte15g00972 15 7164906 7173473 RCT