Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00956 ATGGCCGATTCCTCGGGAAATAAAAATTCAGAGGTTTTTACAGAGGAGGAGAAAAAATCTGGAGAAGGCACCAAACTTGAGTTTTCTGAAGATGAGGAAAGTCTCATAGCTAGGATGTATAGTTTGGTGGGTGAAAGGTGGTCTTTGATAGCTGGAAGAATTCCGGGAAGAACAGCAGAGGAAATTGAGAAATATTGGACCTTAAGAAACTCAAACAGAAAATAA 225 0.3956 MADSSGNKNSEVFTEEEKKSGEGTKLEFSEDEESLIARMYSLVGERWSLIAGRIPGRTAEEIEKYWTLRNSNRK* 75
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00956 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 74 IPR017930 -
Pte15g00956 74 MobiDBLite consensus disorder prediction 1 26 - -
Pte15g00956 74 SMART sant 24 72 IPR001005 -
Pte15g00956 74 Gene3D - 27 69 - -
Pte15g00956 74 FunFam MYB-like transcription factor 27 69 - -
Pte15g00956 74 ProSiteProfiles Myb-like domain profile. 20 66 IPR001005 -
Pte15g00956 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 27 69 - -
Pte15g00956 74 Pfam Myb-like DNA-binding domain 27 66 IPR001005 -
Pte15g00956 74 CDD SANT 27 66 IPR001005 -
Pte15g00956 74 MobiDBLite consensus disorder prediction 10 26 - -
Pte15g00956 74 SUPERFAMILY Homeodomain-like 27 67 IPR009057 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte15g00956 Pte-Chr15 7027093 7028010 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00956 28 66 MYB Transcription Factor Family AT4G09460 56.410 2.78e-13 60.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte15g00956 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00956 - - qsu:112016294 98.2117