Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00920 ATGGCCTCTTCCAGCTATACCTGCTCTCCTTGTGCTGCCTGCAAATTTCTAAGGAGGAAATGCATGCCAGATTGTATTTTTGCACCGTATTTTCCACCAGAAGAGCCCCAAAAGTTCGCCAATGTTCACAAAATATTTGGGGCAAGCAATGTGAGTAAACTGCTCAATGAAGTCCAATCCCACCAGCGAGAAGATGCAGTGAACTCTCTAGCCTACGAAGCAGAAGCCCGGATAAAAGATCCAGTCTATGGATGTGTTGGAGCAATCTCAGTCCTTCAACGGCAAATCATTCGACTCCAGAAGGAATTGGATGCCACAAATGCAGATTTAATTCGCTGCAGCTATAATGAAATGTCAACCACATCTCAATTTGGCAAAAGGACGACTCAGGGAGTAGGGTCATCATTTGGCCAAGATTCTGGTCCGTATAATTATGCTTATCCATGGAATGATCAAGCTTATGGTGATAACTATGCCAGTAGGGGAGATGACAATTGA 498 0.4418 MASSSYTCSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQSHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQIIRLQKELDATNADLIRCSYNEMSTTSQFGKRTTQGVGSSFGQDSGPYNYAYPWNDQAYGDNYASRGDDN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00920 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 123 - -
Pte15g00920 165 Coils Coil 89 109 - -
Pte15g00920 165 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pte15g00920 165 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00920 Pte-Chr15 6756804 6758827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00920 4 127 AS2 family AT3G27650 77.165 5.62e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte15g00920 LOB 1.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00920 - - gmx:100800167 261.922