Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00873 ATGGCATCTTTGGAGGAGAAAGCTGCAGCTGGAACTTGCACTCCTGCTTCTGATATCATGCATATTTTCCTGTCTCGGTTTTCTGAATCTAATTGGTCTCCGTTAAAATCTTTCGAAATGCAGGTTGGAAAAGAATTTATCTTTCAGTACTACAATGTCTTGTATCGGTGTCCCGAGCTAGGACATCAGTTTTACCAGGATATTAGTAAGCTTCGTCGCCCAGAAGAAAATGGTCATATGAGCATTACAACCACTATGCAGGCAATTAAAGAGAAAATACTCTCAATGGGCTACTCTGGACCAGATTGCAAGACTGAGGTTATATCTGTTGATTCCCAAGATTCCTACAATGGAGGAATTATTGTGGCTGTTACTGGGTATATGACCTTAAAGGACAAGTTAAGACGGATGTTCGTCCAGATTTTCTTTCTTGCTCCACAAGACAAAGGCTACTTTGTTTTGACTGATGTTCTTAGATATGTTGACGACGACAGACCACAACAAGTGGAAGTTGTTGACGTTCCTGACAAGTCCCAAACTATGTCTGAATCCTCTTTGACATCCTCAGGGACGGAGGTTGTTGACGTTCCTGACAAGTCCCAAGCTATGTCTGAATCCTCTTTGACTTCCTCATCTAGCCTTGAAATGGTTGAAGTTCCAGGGATGGAGATTGTTGAAGTTCCTGACAAGTCCCAAATTTCGTTGGAATCCTCTTCTAGCTCAGAAGAAGTGCCTAAGAAGTCATATGCCTCCGTAGTGAGTTTCCATCTTTTCATCTCTCATGGGCATCGGTTTTTCTGTGATTTTCTTTTGAAATCTAATGCGACACGGTCATATGCTCCTGCATCTTCTGCTGTAAAACCTGCACCAAGGACCCAAAATCATCTGGTGGTTACTGCATCTCCACCAGTTGATGTATCCAAGACTTTGGCTCCTGATTCTAAGGTTACTGGAAATGGGAATCAGCTAAAAACTGGAGATAATCGATATTCTATCTATCTAAAAGGGTTGCCCATGTCTGCTACAAATAACCTTATTGAGAATGAGTTCAAGAAGTTTGGATCTATCAAGAGAAATAGTATCCAAATTAAAACCAATAAGGATTTCTGTTTTGGCTTCGTTGAATTTGAAGTGTCAAGTGCTATGCAAAGAGCAATAGAGGCTTCACCAGTTCTCATCAATGGACACCGGGTTGTCGTTGAGGAAAAGAGATCCATGAACCGAAGCAATCCTAGAGGGCGAGGATACAGGACTGAACGAGGCAGAGGTTATGGTGATGTTACCAATGAAAAGAATTATGGTGATGGTTATGTGAGTGGCAGGTCGGAGAACGGACACAGCAATAGGGGATGGCGCTTCAGCTCGGGGAATTAA 1374 0.4236 MASLEEKAAAGTCTPASDIMHIFLSRFSESNWSPLKSFEMQVGKEFIFQYYNVLYRCPELGHQFYQDISKLRRPEENGHMSITTTMQAIKEKILSMGYSGPDCKTEVISVDSQDSYNGGIIVAVTGYMTLKDKLRRMFVQIFFLAPQDKGYFVLTDVLRYVDDDRPQQVEVVDVPDKSQTMSESSLTSSGTEVVDVPDKSQAMSESSLTSSSSLEMVEVPGMEIVEVPDKSQISLESSSSSEEVPKKSYASVVSFHLFISHGHRFFCDFLLKSNATRSYAPASSAVKPAPRTQNHLVVTASPPVDVSKTLAPDSKVTGNGNQLKTGDNRYSIYLKGLPMSATNNLIENEFKKFGSIKRNSIQIKTNKDFCFGFVEFEVSSAMQRAIEASPVLINGHRVVVEEKRSMNRSNPRGRGYRTERGRGYGDVTNEKNYGDGYVSGRSENGHSNRGWRFSSGN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00873 457 FunFam Nuclear transport factor 2 family protein 34 164 - -
Pte15g00873 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 388 IPR000504 GO:0003723
Pte15g00873 457 MobiDBLite consensus disorder prediction 404 426 - -
Pte15g00873 457 CDD RRM_SF 332 401 - -
Pte15g00873 457 Gene3D - 313 447 IPR012677 -
Pte15g00873 457 ProSiteProfiles Nuclear transport factor 2 domain profile. 42 160 IPR018222 -
Pte15g00873 457 MobiDBLite consensus disorder prediction 404 457 - -
Pte15g00873 457 MobiDBLite consensus disorder prediction 175 207 - -
Pte15g00873 457 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 41 440 IPR039539 -
Pte15g00873 457 SUPERFAMILY NTF2-like 40 161 IPR032710 -
Pte15g00873 457 MobiDBLite consensus disorder prediction 441 457 - -
Pte15g00873 457 CDD NTF2 41 162 IPR018222 -
Pte15g00873 457 SMART rrm1_1 331 401 IPR000504 GO:0003723
Pte15g00873 457 Gene3D - 35 165 - -
Pte15g00873 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 423 IPR000504 GO:0003723
Pte15g00873 457 Pfam Nuclear transport factor 2 (NTF2) domain 42 160 IPR002075 -
Pte15g00873 457 SUPERFAMILY RNA-binding domain, RBD 326 426 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00873 Pte-Chr15 6359544 6362686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00873 311 387 Eukaryotic Initiation Factors Gene Family AT2G36660 34.615 4.23e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00873 K24983 - cave:132163204 327.405