Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00842 ATGGATTGGGATTGGAAAGAATTTGCTTGGGATCCAGCAGAGTTGGAGCTATCGGCTGATGGAATAGGAGAGGAGGTGACCGATAGAGCTCTGATGGGTCTGAGGCTTGGAGATACTGATGTTCAGGAAAGCAGGTCAATGGTGGATAGGGTCTATGACCCAAAAGCCTCCAAGATTGTTTCAACACCATCAGGGTCAACAAAGAGAACACGTGTGCAAACTGGATCACAGAGCATTGGTTGCCTGGTTGATGGCTGCATCTCTGATCTTGGTAATTGTAAGAACTATCATCGCCGGCACAGGGTCTGTGAGCAACACTCGAAGGCTCCTATTGTCATTTTGGAGGGCAAGCGACAAAGATTCTGTCAGCAATGTAGTAGATTCCATGGTTTGGGAGAATTTGATGAAGTTAAGAGAAGTTGCAGGAAGCGTCTGGATGGGCATAATAGGCGCAGAAGGAAGCCTAAGCCGCCATCTCTCTTCATGTCTGGACCCAGAATCTTGCAGTTCAATAATCCACAGATATGTGCTACGCCTTCTGTCAGAAGTTTGTGGCCTGCCTTTGCGAAAAACGAAGCCAAATCTAAGACAAATGATCACCAGCAACTTTGGTACGCCATGGACCAACATGGTCCTGCTAGTTATTTCACTAACAAGAATCGCGGACGAGGTACCCAATTCTCTCTTATGCAGGCATATGACAATCTGCCATCCCCTGGTGAATCTCTATCCACCAAGCTGCCACATGTCTCGCAAGGAATTGGAAATGGAACAACTCGATCAATTGACTCGAGTTGTGCTCTCTATCTTCTGTCATCGAATTTGGTATCAACTTCAGAATTGTGCTTGATGCGGTCTGCTATTAGTCCTCCAACTGAATCTCACTACACAGAGCTGCAATTTGAAGCTGCAGACAAACATCCATCCTCACTTGGCATGAAAAACAACACAGTGCTTATCCAGAATGCTGATGATACAAACAACATCATTTACAATGAGATGCGGCATACAGAACGTGTAGAAAGTGGGGACATACTGACACTTCCATATTCCTGGGAGTAG 1062 0.4586 MDWDWKEFAWDPAELELSADGIGEEVTDRALMGLRLGDTDVQESRSMVDRVYDPKASKIVSTPSGSTKRTRVQTGSQSIGCLVDGCISDLGNCKNYHRRHRVCEQHSKAPIVILEGKRQRFCQQCSRFHGLGEFDEVKRSCRKRLDGHNRRRRKPKPPSLFMSGPRILQFNNPQICATPSVRSLWPAFAKNEAKSKTNDHQQLWYAMDQHGPASYFTNKNRGRGTQFSLMQAYDNLPSPGESLSTKLPHVSQGIGNGTTRSIDSSCALYLLSSNLVSTSELCLMRSAISPPTESHYTELQFEAADKHPSSLGMKNNTVLIQNADDTNNIIYNEMRHTERVESGDILTLPYSWE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00842 353 SUPERFAMILY SBT domain 80 159 IPR036893 GO:0003677|GO:0005634
Pte15g00842 353 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 267 IPR044817 GO:0003677
Pte15g00842 353 Pfam SBP domain 81 154 IPR004333 GO:0003677
Pte15g00842 353 Gene3D - 72 142 IPR036893 GO:0003677|GO:0005634
Pte15g00842 353 MobiDBLite consensus disorder prediction 145 164 - -
Pte15g00842 353 ProSiteProfiles Zinc finger SBP-type profile. 78 155 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00842 Pte-Chr15 6114467 6117112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00842 81 171 SBP-box Gene Family AT5G50670 62.626 4.17e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte15g00842 SBP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00842 - - lja:Lj1g3v3847150.1 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00842 15 6114467 6117112 Pte15g00842 15 6114467 6117112 RCT