Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte15g00792 | ATGGGCGAAAATAATCAGGCTGAGGATATGAATGGTACGATGCTTGCGTCTGGGACTAACGTCTTACCTGAAAATGATGTCAAACAAAGGAGTGGGGATCAAAGAGAAGCTCTGCCAGGAGAACCCAAATGCATTGTCTGTGGTCGATATGGTGAATATATATGTGATGAGACTGATGATGATGTCTGTAGCATGGAATGTAAACAGGCTTTATTATGCAGGATTGCAAACTCTAAGTTGTCTGTCAACACCGTTCCACCTAAAAAACTACCTGCCAATGATGAATGCTTTTATGTTATTGATGCTGGTGGACAATCAGGATCTCTATCTTTAGCTATAGATCGAGCTGATGCCCTTAGAAGTAAGCTTGACATTCATGTGAGGGGTTCTCTGGAAATTGAACCCATACTATCATTCAATTCATTTGACCTGCCTGACAGGCTTCTCCACAATATAGAAGCTGCAGGTTATGAAATGCCCACACCTGTACAGATGCAAGCAATTCCTGCAGCTTTGAAGGGGAAAAGCCTTCTCGTTACTGCTGATACTGGCTCTGGAAAGTCTGCCTCTTTTCTAGTTCCAGTTATTTCTCATTGCACGAAATTTCGCATTGATGGCTTATATGATCAGAGAAGACCGTTGGCAATGGTTCTAACACCAACTAGAGAGCTTGCAATACAGATTGAAGAGCACGCCAAGTTGCTTGGAAAGGGATTGCCATTCAAAACTGCCCTTGTGATTGGTGGTGATGCAATGGCTGGACAGCTGTACCGCATTCAACAAGGAGTGGAACTTGTAGTAGGGACACCTGGAAGGCTCATCGATATTTTAGCCAAGCACAACGTTGAATTAGATGACATAATGATCTTTGTTGTGGATGAGGTAGACTGCATGCTACAGAGGGGTTTCCGCGATCAGGTGATGCAGATCTTTACAGCTGTGCCTCAGTCACAGGTCATGATGTATTCTGCAACCATTTCTCCAGATATAGAGAAGATGGCTAACTCCATGAAGAGTGATATGCTTGTCATCTCTGTTGGTAAGTCCAATAGACCAAGTACGGCAGTGAAGCAGCTGGCTATATGGGTTGATACCAAGCAAAAGAAGCAAAAGCTTTTTGACATACTGACGAGTAAAAGGCATTTTATGCCACCTGCGGTGGTGTTTGTGGATTCAAAACTAGGAGCAGATCTCCTAGCTAATGCTGTAAAGGTTACAACTGGAATCAAAGCACTTTCTCTTCATGGAGAGAAGTCTATGAAAGAAAGGAGAGAAATTATGAGGTCTTTCCTAGTGGGAGAAGTTCCAGTTGTAGTTTCTACAGGAGTTCTAGGTCGGGGTGTTGATCTGTTGGGTGTTAGACAGGTAATAATTTTTGACATGCCAAATTCAATCAAGGAGTACGTACATCAGGTTGGTAGGGCATCTAGAATGGGAGATGAAGGTCAAGCAATAGTTTTTGTGAATGACGAGAATAAGAATCTATTCTCAGAGTTGGTTGAAATTCTACGATCTGCTGGAGCAGTTGTTCCTCAGGAGCTTCTGAATTCAAAGTATACAGTTGGATTTTTCTCTGGTAGCAGGGGCCAGAGAAAGAGGAAGCATCGGTGCTAA | 1614 | 0.43 | MGENNQAEDMNGTMLASGTNVLPENDVKQRSGDQREALPGEPKCIVCGRYGEYICDETDDDVCSMECKQALLCRIANSKLSVNTVPPKKLPANDECFYVIDAGGQSGSLSLAIDRADALRSKLDIHVRGSLEIEPILSFNSFDLPDRLLHNIEAAGYEMPTPVQMQAIPAALKGKSLLVTADTGSGKSASFLVPVISHCTKFRIDGLYDQRRPLAMVLTPTRELAIQIEEHAKLLGKGLPFKTALVIGGDAMAGQLYRIQQGVELVVGTPGRLIDILAKHNVELDDIMIFVVDEVDCMLQRGFRDQVMQIFTAVPQSQVMMYSATISPDIEKMANSMKSDMLVISVGKSNRPSTAVKQLAIWVDTKQKKQKLFDILTSKRHFMPPAVVFVDSKLGADLLANAVKVTTGIKALSLHGEKSMKERREIMRSFLVGEVPVVVSTGVLGRGVDLLGVRQVIIFDMPNSIKEYVHQVGRASRMGDEGQAIVFVNDENKNLFSELVEILRSAGAVVPQELLNSKYTVGFFSGSRGQRKRKHRC* | 538 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte15g00792 | 537 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Pte15g00792 | 537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 284 | 493 | IPR027417 | - | |
| Pte15g00792 | 537 | CDD | SF2_C_DEAD | 356 | 488 | - | - | |
| Pte15g00792 | 537 | Gene3D | - | 110 | 345 | IPR027417 | - | |
| Pte15g00792 | 537 | Pfam | HIT zinc finger | 42 | 68 | IPR007529 | - | |
| Pte15g00792 | 537 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Pte15g00792 | 537 | Gene3D | - | 346 | 521 | IPR027417 | - | |
| Pte15g00792 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 168 | 344 | IPR014001 | - | |
| Pte15g00792 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 367 | 518 | IPR001650 | - | |
| Pte15g00792 | 537 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 133 | 513 | - | - | |
| Pte15g00792 | 537 | Pfam | DEAD/DEAH box helicase | 161 | 332 | IPR011545 | GO:0003676|GO:0005524 | |
| Pte15g00792 | 537 | SMART | helicmild6 | 397 | 479 | IPR001650 | - | |
| Pte15g00792 | 537 | SMART | ultradead3 | 156 | 359 | IPR014001 | - | |
| Pte15g00792 | 537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 122 | 346 | IPR027417 | - | |
| Pte15g00792 | 537 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 137 | 165 | IPR014014 | GO:0003724 | |
| Pte15g00792 | 537 | Gene3D | - | 24 | 81 | - | - | |
| Pte15g00792 | 537 | Pfam | Helicase conserved C-terminal domain | 369 | 479 | IPR001650 | - | |
| Pte15g00792 | 537 | FunFam | DEAD-box ATP-dependent RNA helicase 41 | 24 | 81 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte15g00792 | Pte-Chr15 | 5757589 | 5764844 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte15g00792 | 133 | 499 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.108 | 1.92e-57 | 195 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte15g00792 | K19466 | - | cave:132163386 | 761.14 |