Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00780 ATGGAGGAGCCAAGTGTTGTGCAGAAAGGAGATGAAGTTCTGGACTTGCCTCCAGGATTTAGATTCCATCCCACCGATGAGGAGGTCATAACTTGTTATTTGACAAAGAAGGTCATGAATAGCAGCTTCAATGCAATTGCAATAGGAGCAGTTGATTTGAATAAGTGTGAACCTTGGGATTTGCCAAAGAAAGCCAAGATGGGAGAGAAAGAGTGGTTCTTCTTTTGTCAGAAAGATAGAAAGTATCCAACAGGCACAAGAACAAACCGAGCCACCGAATCTGGTTACTGGAAGGCTACTGGCAAAGACAAAGAGATCTTCAAAGGTAAAGGTTGCCTTGTTGGGATGAAGAAGACCCTGGTTTTCTACAAGGGAAGAGCTCCAAAGGGAGAGAAAACCAATTGGGTTATGCATGAATTTAGATTGGAAGGCAGATTCGCAAGTTATCATCTTCCAAGAGCTGCAAAGGATGAATGGGCTGTCTGCAAGGTTTTCCATAAGAACAGTACTGGCATCAAAAAGACCACAGTGCCTGAACTTTTGAGGATGAATTCCTTTGCTGATGATGATTTGCTGGATTACTCTTCACTCCCACCTCTCATGGATTCTGCTTATGTGGAGAAATACAAACCTGATGGCAATGAATTGAAAGGGACGACCACACTTTCATCGGCAAAATCATTAGAACCTGCATACAATTACCTTCCCAACTGCCGCACGATCCATCCAGTGTCAGTGAAGCAAGAAAATAACAGTAACTTTCAGATGCCCATCAGCAGTTATACCACACTCGGTGCAAGTAGCCAAGCTAATCTCACTAATCCATTGGGTTCAAGTTTTCCATACCATCCAATGTCTGAGTACCGTTCAGGTTATATGCAAGCTGATCAGAAGAACATTTCTTATGCGCCACGACCTGTTACAGCAATGTCGTCTGGCTTTTGGGGAAGAGATGATGACACAATTCTTAGATCGTTTGTGGCAAACATTAATGACATATCTGAAATCAAAGTGCAGCAGCCATTCTCTTCGAATCAGTCTAGGGTGAGTGTATCCCAAGACACTGGACTAAGCAACGACATCAACACGGAGACATCCTCAGTTGTTTCGAAGCAAGACATGACAAACAACAACACATCTTTCGACGTCGATTTGGAATGTCCATCAGTTGGCCCTATGTCAGATTTAGATTGCTTGTGGGACGACAACTACTGA 1215 0.4329 MEEPSVVQKGDEVLDLPPGFRFHPTDEEVITCYLTKKVMNSSFNAIAIGAVDLNKCEPWDLPKKAKMGEKEWFFFCQKDRKYPTGTRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGRFASYHLPRAAKDEWAVCKVFHKNSTGIKKTTVPELLRMNSFADDDLLDYSSLPPLMDSAYVEKYKPDGNELKGTTTLSSAKSLEPAYNYLPNCRTIHPVSVKQENNSNFQMPISSYTTLGASSQANLTNPLGSSFPYHPMSEYRSGYMQADQKNISYAPRPVTAMSSGFWGRDDDTILRSFVANINDISEIKVQQPFSSNQSRVSVSQDTGLSNDINTETSSVVSKQDMTNNNTSFDVDLECPSVGPMSDLDCLWDDNY* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00780 404 Gene3D NAC domain 25 171 IPR036093 GO:0003677|GO:0006355
Pte15g00780 404 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Pte15g00780 404 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Pte15g00780 404 FunFam NAC domain-containing protein 100-like 25 171 - -
Pte15g00780 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 273 - -
Pte15g00780 404 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00780 Pte-Chr15 5670649 5672711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00780 1 273 NAC Transcription Factor Family AT5G18270 55.326 6.18e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte15g00780 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00780 - - aprc:113861501 442.195