Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00715 ATGGCAAGTAGTAGAAACACCCACTGGTGTTATAGATGCAGAAGACCATTTCGTTTAAGAGGGAGAGATGCAGTTTGTCCGGCATGTGATGGAGGTTTTATTCAAGAGCTTGATGACATGGTACATTTTAACCCCGTAAATTCCTTTGGGTTGGAGAGCTATGAACAGCATGATAGAAGGTTCAGACTTATCGAAGCCTTCTCAACATTTATGAGAAACCGATTCACAGATGGGGGCCATGGTCGTGATAGCAGGGCAAGGTCAGATTCTGTTCCTGACCATAGTTCCGGGTTTGGTCCTTTGTTGATTTTCGGTGGCCAGTTTCCATTTAGATCGTCTAGAAATGGAGGGCTTGAAACTTTCTTTAGCGGCACACCTAGAATTGAAATAACACGGGGTCATACTGGTGGTTATTTCGTAGGTCCTAGACTGGAAGAACTCTTTGAACAACTCTCAGCCAATGATCGACAAGGCCCTCCTCCAGCATCCAGATCCTCTATAGATTCAATGCCCACCGTTAAGATCACACAGAGACATCTTGGTGCTAACTCACATTGTCCAGTGTGCCAAGACAAATTTGAGTTGGGTTCCAAAGCTAGACATATGCCATGCAACCATATATATCATTCAGATTGTATAGTTCCGTGGCTGGTACAACACAACTCTTGTCCTGTATGCCGCCAGGAATTGCCACCACTAGGTTTGAGCAGTGGCCGTAACTCCAATTATAGCGCTACCAGTAGGAGGGAGAGCAGTCAAGGAAGGCGAAATCCATTCTCCAACTTTTGGCCATTTCGTTCATCTATCTCTGGCACAGTCCGTGGCAGGGAAGCTGGAAGTTGA 843 0.4579 MASSRNTHWCYRCRRPFRLRGRDAVCPACDGGFIQELDDMVHFNPVNSFGLESYEQHDRRFRLIEAFSTFMRNRFTDGGHGRDSRARSDSVPDHSSGFGPLLIFGGQFPFRSSRNGGLETFFSGTPRIEITRGHTGGYFVGPRLEELFEQLSANDRQGPPPASRSSIDSMPTVKITQRHLGANSHCPVCQDKFELGSKARHMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPLGLSSGRNSNYSATSRRESSQGRRNPFSNFWPFRSSISGTVRGREAGS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00715 280 SMART ring_2 186 226 IPR001841 -
Pte15g00715 280 MobiDBLite consensus disorder prediction 237 280 - -
Pte15g00715 280 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Pte15g00715 280 MobiDBLite consensus disorder prediction 237 268 - -
Pte15g00715 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Pte15g00715 280 CDD RING-H2_RNF126-like 186 227 - -
Pte15g00715 280 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pte15g00715 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 231 - -
Pte15g00715 280 Pfam Ring finger domain 185 227 IPR001841 -
Pte15g00715 280 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pte15g00715 280 SUPERFAMILY RING/U-box 166 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00715 Pte-Chr15 5180810 5184384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00715 121 277 C3H Transcription Factor Family AT5G01980 34.783 2.69e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00715 K11982 - qsa:O6P43_006301 426.402