Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00670 ATGTCTCTTGAAGACTCTCTGAGATCTCTGTCGCTGGATTATCTGAACCTGCTCATCAATGGCCAAGCCTTCAGTGACGTAACTTTCAGCGTAGAGGGTCGTTTAGTCCACGCTCATCGTTGTATCCTCGCTGCTAGAAGCCTCTTCTTCAGGAAATTCTTCTGTGGTCCGGACCCTCCATCCGGGCTCGATCTTTCTGGGCCACGCATCAACACGGCCACGTCGACGTCAAGAGCACAAGGAGCTGGGGTCATACCGGTCAACTCAGTGGGATACGAGGTCTTCTTGTTGCTGCTGCAGTTCCTCTACAGTGGACAGGTCTCTATTGTTCCCCAGAAGCATGAACCAAGGCCGAATTGTGGTGAGAGAGGCTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACTCTTGCTGCTGCTAGATCCTTCGGTGTCGAACAACTTGCATTACTCACTCAGAAGCAATTGGCCAGCATGGTGGAGAAGGCCTCAATTGAAGATGTGATGAAAGTTCTACAAGCATCAAGGAAGCAAGACATGCATCAACTCTGGACAACTTGCTCCCACCTTGTTGCAAAGTCTGGCCTCCCACCTGAAGTTCTAGCCAAACACCTTCCTATTGATATTGTTGCCAAGATCGAAGAGCTCCGTCTGAAGACCTCCCTGGCGCGACGCTCAAGCTTTTCGCCCCACCACCACCATCACCATGATCTTGGCGTTGCAGCAGATCTTGAGGACCAGAAGATTCGACGAATGAGAAGGGCACTTGATTCATCCGATGTAGAACTAGTTAAGCTCATGGTGATGGGTGAAGGACTAAACTTAGATGAAGCATTGGCTTTGCATTATGCCGTAGAGAACTGTAGTAGAGAGGTGGTGAAGGCTTTGCTTGAGCTTGGAGCTGCGGACGTGAACTATCCTGCAGGACCTGCTGGCAAATCTCCACTTCACATTGCTGCAGAGATGGTCTCCCCTGACATGGTGGCTGTACTTCTCGATCATCATGCTGATCCAAATGTTCGTACGGTTGACGGAGTCACTCCTCTTGATATTCTCCGAACCCTAACCTCTGATTTTCTCTTCAAAGGAGCAGTACCTGGACTAACACATATAGAACCCAATAAGCTAAGATTGTGCCTAGAGCTCGTTCAGTCTGCAGCTCTTGTGATTTCACGAGAAGAAGGCAATGCAAACCCTCCTACTTCAACTGCTTTATACCCACCAATGAGTGAAGATCACAACAGCAGCAGTAGTAATAGTAACATTGCTAACCTCAACCTGGATTCAAGGTTGGTTTATCTCAATCTAGGTGCAACTGGTTCAGCTCCAATGGGTTCAGATGATAATAATAGTCACAATACACAAAGGGATCATGTTATGCATCGTCATAGAGCACAAGGTGGTGGGTGTGACCCTACAATGTACCATCACTCTCATGATTTTTGA 1458 0.4849 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDLSGPRINTATSTSRAQGAGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLQASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKTSLARRSSFSPHHHHHHDLGVAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKSPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANPPTSTALYPPMSEDHNSSSSNSNIANLNLDSRLVYLNLGATGSAPMGSDDNNSHNTQRDHVMHRHRAQGGGCDPTMYHHSHDF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00670 485 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Pte15g00670 485 SUPERFAMILY POZ domain 9 193 IPR011333 -
Pte15g00670 485 Pfam Domain of unknown function (DUF3420) 199 257 IPR024228 -
Pte15g00670 485 SMART BTB_4 25 164 IPR000210 GO:0005515
Pte15g00670 485 MobiDBLite consensus disorder prediction 455 469 - -
Pte15g00670 485 SUPERFAMILY Ankyrin repeat 274 358 IPR036770 -
Pte15g00670 485 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Pte15g00670 485 Gene3D - 246 363 IPR036770 -
Pte15g00670 485 MobiDBLite consensus disorder prediction 398 423 - -
Pte15g00670 485 SMART ANK_2a 315 344 IPR002110 GO:0005515
Pte15g00670 485 SMART ANK_2a 280 310 IPR002110 GO:0005515
Pte15g00670 485 CDD BTB_POZ_NPR_plant 8 164 - -
Pte15g00670 485 MobiDBLite consensus disorder prediction 445 485 - -
Pte15g00670 485 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Pte15g00670 485 Gene3D Potassium Channel Kv1.1; Chain A 4 197 IPR011333 -
Pte15g00670 485 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 484 IPR044284 GO:0099402
Pte15g00670 485 MobiDBLite consensus disorder prediction 399 423 - -
Pte15g00670 485 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Pte15g00670 485 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Pte15g00670 485 FunFam regulatory protein NPR5 isoform X2 246 363 - -
Pte15g00670 485 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00670 Pte-Chr15 4917952 4921317 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pte15g00670 BTB 1.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00670 K14508 - zju:107433767 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00670 15 4917952 4921317 Pte15g00670 15 4917952 4921317 RCT