Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00642 ATGGGAACTCCGGAATTCCCCGATTTGGGAAAGCATTGTACTGTTGAAGATTGCAGGCAGATCGACTTCTTGCCCTTCGAATGCGATGGGTGCAAACAGGTCTATTGTTTGGAACATCGAAGCTTCACAAAGCACCACTGTCCAAAAGCTGATAAAAATGATGTCACTGTTGTCATTTGTCCTCTTTGTGCAAGAGGAGTTCGCCTCATCCCTGATCAAGATCCAAATATATCTTGGGAGAATCACGTGAACACTGAATGTGACCCCTCAAATTATGACAAGGTCGCAAAGAAGAAAAGGTGCCCTGTCCCTCGATGCAAAGAGGTTCTAACATTCTCAAACACAATCAAGTGCAAAGACTGTATGGTAGATCATTGTTTAAAGCATCGGTTTGGTCTAGACCACAAATGTCCAGGACCTAAAAAACCTGAAGCTGGTTTCCCATTCAAGGGTATCCTCAGCAGGAGTACGACAGAGGTTTCCAAACCCAAGCGTCCTCCACAGTCATCTTCTCCAAAATCGTCCTCGGGTTTTTTCACAAAACTGAGCAGTGAAATCAGCCAAGCATGGAATAGTGCTTGGAATGATTTGGTACAGAGCAGCGGAAATGGTCTAGTGGAGGAGTGTCCTCATTGTAGTGCAAAGTTTTCATCTGTGACTACCCTGGTGGAACATGTACAGAAAGTTCATGAAAAGGGTGGCAGCCTGTCTGGGGTAAAGAAGATTGGCATAGATGTCTGTCCCAAGTGTAGTAGAGGGTTCAGAGATCCAGCTTCTCTTGTACAGCATGTTGAGAGGGATCACGGTGGAGCTTCAAAAGCGTAG 825 0.4545 MGTPEFPDLGKHCTVEDCRQIDFLPFECDGCKQVYCLEHRSFTKHHCPKADKNDVTVVICPLCARGVRLIPDQDPNISWENHVNTECDPSNYDKVAKKKRCPVPRCKEVLTFSNTIKCKDCMVDHCLKHRFGLDHKCPGPKKPEAGFPFKGILSRSTTEVSKPKRPPQSSSPKSSSGFFTKLSSEISQAWNSAWNDLVQSSGNGLVEECPHCSAKFSSVTTLVEHVQKVHEKGGSLSGVKKIGIDVCPKCSRGFRDPASLVQHVERDHGGASKA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00642 274 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 232 - -
Pte15g00642 274 ProSitePatterns Zinc finger C2H2 type domain signature. 247 268 IPR013087 -
Pte15g00642 274 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Pte15g00642 274 Gene3D - 80 147 IPR035896 -
Pte15g00642 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 273 IPR013087 -
Pte15g00642 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 230 IPR013087 -
Pte15g00642 274 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pte15g00642 274 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Pte15g00642 274 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Pte15g00642 274 SMART c2h2final6 245 268 IPR013087 -
Pte15g00642 274 SMART c2h2final6 207 230 IPR013087 -
Pte15g00642 274 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Pte15g00642 274 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
Pte15g00642 274 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pte15g00642 274 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pte15g00642 274 MobiDBLite consensus disorder prediction 156 177 - -
Pte15g00642 274 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Pte15g00642 274 Gene3D - 2 58 IPR035896 -
Pte15g00642 274 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pte15g00642 274 Gene3D Classic Zinc Finger 183 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00642 Pte-Chr15 4675192 4676935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00642 1 275 C2H2 Transcription Factor Family AT2G41835 59.310 1.08e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00642 zf-AN1 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00642 - - zju:107432358 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00642 15 4675192 4676935 Pte15g00642 15 4675192 4676935 RCT