Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00635 ATGAATCACTTGACTATAGAGACCGAGGATTCCTTTGCAAGCTTGCTTGAGCTTGCTGCCAATAATGATACTGAGGGTTTCCAAAGATCAATTGAGCATGATCCTACCTGCATCGATGAGGTTGGGCCCTGGTATAGTCGCAGAAAAGGCTCAAAGCACATGGTTAATGAACACCGTACGCCTTTGATGATAGCTGCCACTTATGGTAGCATCGATGTTATGAAATTGATTCTGGCATTGTCTGATGCTGACGTTAATAGAACTTGTGGCCTTGACAAGACCACTGCACTTCACTGTGCCGCCTCTGGTGGGGCTATAAATGCGGTTGATGTTGTGAAATTGCTTTTAGCTGCTGGTGCTGATCCAAATACTGTGGATGCCAATGGTCATCGACCGATTGATGTCATTGTTGTCCCTCCAAAGCTCCAGGATCTCAAGTTTACTCTTCAAGAGCTTCTCTGTACTGATGGTTCTACCACAAAGTGCAACCTTAGGGTTTCAACAGTCATGTCAAATGCAAGTTCACCTCCTCTATCAACTTCCCCAGAAAATGGATCCCCATCCTTTGCCATGGATTTCCAATTGAAGTTGAAGTCTAATGAGTTCCCTGGTTCATCTGCAGCAGAGAAGAAGGAATATCCTGTTGATCCATCGTTGCCAGACATTAAGAATAGCATATACTCAACTGATGAGTTCAGGATGTATTCCTTCAAGGTTCGACCGTGTTCTCGTGCCTATTCTCATGATTGGACTGAATGCCCTTTTGTCCATCCAGGGGAGAATGCTCGGAGAAGGGATCCTAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTCCGGAAGGGGGCTTGTAGACGTGGAGATATGTGTGAGTATGCTCATGGCATTTTCGAATGCTGGCTGCATCCTGCACAATACCGAACTAGACTCTGCAAGGACGGTACAGGTTGCTCCAGAAGGGTTTGCTTCTTTGCGCACACTGCAGAGGAACTCCGTCCTCTGTACGTTTCAACTGGTTCTGCCGTTCCTTCTCCCCGTTCAAGTAATTCATCTGCCATGGACTTTGCTTCAGCCATGAACATGTTACCTGGCTCTCCATCATCGATGTCTGTAATGTCCCCGTCACCATTTACTCCACCTATGTCTCCATCTGGTAACGGCATGACACATGGTTCTGTTCCTTGGCCTCAGCAAAATGTCCCATCGTTGCATTTGTCAGGCAGCAACCTTCAGTCTAGTCGATTGAGATCATCCCTCAGTGCTAGAGATATTCCTGCGGAGGACTTTGACTTGTCAGATTATGATATTCAGCAACTGCAACTTCTTAATGAATTATCTTGTCTCTCTCAACAATCTATCAATTCTAATTCTTTAAACCGTCCTGGCCGGTTGAAGATCTTGACCCCTTCAAATCTTGATGATATGTTTTCTGCTGAGAGCTCCTCTCCTAGATTTGCGGAACAAGCAATGGGGGCATCTGTTTTCTCACCAACGCACAAAACAGCTTTTCTCAATCAATTTCAGCAGCAGCAAGGCATGCTATCACCAGTTAACACAAATTTCTCAAGTAAGAATTCTGACCATCCTCTATTGCAGGCCTCCTATGGGGTGCAAGCTTCTGGAAGGATGTCCCCACGTAGTGTGGAACCTATTTCACGCAATGTCGAACCGATTTCACCTCTGAGCTCTCGTATTTCTATGTTTGCTCAACGTGAAAAGCAGCAGCAATTTAGGAGCCTGAGCTCTCGAGAACTTGGTTCCAACTCTGCAGGTATTGCAGGATCCTCAGTCAATCCTTGGTCTAAATGGGGATCTTCAAATGGGAAGTTGGACTGGGCTGTTGGTCCGGACGAATTGGGTAAGCTTCGAAGGTCATCTTCTTTCGAGCTTGGTAATAATGGTGATGAGCCTGATTTGTCATGGGTTCAGTCACTTGTTAAAGAGTCTCCTACTGACATTAAGGAAAAGTTGGCGGCAGCTAATTCCTCAGCTGACAGTTCAAATTTGAATATTCCTATGGAGTCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTTGCACAGCAGAACTAA 2100 0.4552 MNHLTIETEDSFASLLELAANNDTEGFQRSIEHDPTCIDEVGPWYSRRKGSKHMVNEHRTPLMIAATYGSIDVMKLILALSDADVNRTCGLDKTTALHCAASGGAINAVDVVKLLLAAGADPNTVDANGHRPIDVIVVPPKLQDLKFTLQELLCTDGSTTKCNLRVSTVMSNASSPPLSTSPENGSPSFAMDFQLKLKSNEFPGSSAAEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGIFECWLHPAQYRTRLCKDGTGCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSNSSAMDFASAMNMLPGSPSSMSVMSPSPFTPPMSPSGNGMTHGSVPWPQQNVPSLHLSGSNLQSSRLRSSLSARDIPAEDFDLSDYDIQQLQLLNELSCLSQQSINSNSLNRPGRLKILTPSNLDDMFSAESSSPRFAEQAMGASVFSPTHKTAFLNQFQQQQGMLSPVNTNFSSKNSDHPLLQASYGVQASGRMSPRSVEPISRNVEPISPLSSRISMFAQREKQQQFRSLSSRELGSNSAGIAGSSVNPWSKWGSSNGKLDWAVGPDELGKLRRSSSFELGNNGDEPDLSWVQSLVKESPTDIKEKLAAANSSADSSNLNIPMESVDHAVLGAWLEQMQLDHLVAQQN* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00635 699 PANTHER UNKEMPT FAMILY MEMBER 17 650 IPR045234 -
Pte15g00635 699 SUPERFAMILY Ankyrin repeat 52 136 IPR036770 -
Pte15g00635 699 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pte15g00635 699 SMART ANK_2a 92 124 IPR002110 GO:0005515
Pte15g00635 699 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pte15g00635 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Pte15g00635 699 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pte15g00635 699 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pte15g00635 699 MobiDBLite consensus disorder prediction 367 392 - -
Pte15g00635 699 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Pte15g00635 699 Pfam Ankyrin repeats (3 copies) 53 126 IPR002110 GO:0005515
Pte15g00635 699 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Pte15g00635 699 Gene3D - 273 334 - -
Pte15g00635 699 Gene3D - 4 139 IPR036770 -
Pte15g00635 699 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pte15g00635 699 MobiDBLite consensus disorder prediction 573 592 - -
Pte15g00635 699 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Pte15g00635 699 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00635 Pte-Chr15 4633553 4636538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00635 7 692 C2H2 Transcription Factor Family AT5G12850 52.727 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g00635 Ank_2 1.1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00635 - - qsa:O6P43_006533 1073.15