Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00627 ATGGATGACCCTTACTCCAATCTCTTCACAAGTTCCAAACACAAGTCTCTCCACAGTTATCCACTTTCAAATCCACCCACTCAACATCATTCCTATCATTTTCAGTATACCTTCGTCGACCAGACCAACTACAGTACCTTTCTCCAATACCAGCAAGGTACCTGCTCACCTCCATCTCATCCTCCATTGAGAGAAGCAATCCCCTTCTTGAGTCTGAGCTCCAGAAAAGTAGAAGATGATCAGGAGCAGCAAGAACAAGAGGCGCATTCCTCCGGTACTCCTATGGACATAGAAGGAAACATAGGCAGCAGAGCCAAGGAAGAAGAGAAGGAGGATGCTGGTGTGACTGTCGCACTTCACATAGGGTTGCCAAACCCTAGTGCTGCTGAGATGGCCTCTTTTCTATCTTCTTCATCTGATATCAATTGTAAAGAACACGGTGAGATTGATGATTCTGGATTCACAGGGAGTAGCCTTAACAAGGGTCAGTATTGGATCCCAACCCCTTCTCAGATTCTCATTGGTCCTTCACAGTTCTCCTGCCCTGTTTGCTGCAAAACCTTTAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGGTCACAGTATAGAAAAGGGCCAGAATCTCTGAGAGGGATACAACCAACAGGAATGCTCAGGCTTCCTTGCTATTGCTGTGCTCCCGGTTGCAGGAACAACATTGATCATCCGAGGGCTAAACCTCTCAAGGATTTCAGAACTCTTCAAACACATTATAAAAGGAAACATGGAATTAAACCTTTTATGTGCAGAAAATGTGGGAAGGCTTTTGCAGTCAGAGGAGATTGGAGAACTCACGAGAAGAACTGTGGGAAGCTTTGGTGTTGTACTTGTGGATCTGATTTCAAGCACAAGAGGTCACTCAAAGATCATATAAAAGCTTTTGGGAATGGTCATGCAGTATATGGTATTGATGGATTGGAAGAAGATGATGAATATGCATCAGAAGTGGAGCAAGATAACGACTCCACGCAGTGA 1023 0.4467 MDDPYSNLFTSSKHKSLHSYPLSNPPTQHHSYHFQYTFVDQTNYSTFLQYQQGTCSPPSHPPLREAIPFLSLSSRKVEDDQEQQEQEAHSSGTPMDIEGNIGSRAKEEEKEDAGVTVALHIGLPNPSAAEMASFLSSSSDINCKEHGEIDDSGFTGSSLNKGQYWIPTPSQILIGPSQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGIQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWCCTCGSDFKHKRSLKDHIKAFGNGHAVYGIDGLEEDDEYASEVEQDNDSTQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00627 340 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Pte15g00627 340 FunFam Zinc finger protein WIP2 232 314 - -
Pte15g00627 340 Gene3D Classic Zinc Finger 178 201 - -
Pte15g00627 340 SMART c2h2final6 179 201 IPR013087 -
Pte15g00627 340 SMART c2h2final6 263 283 IPR013087 -
Pte15g00627 340 SMART c2h2final6 288 314 IPR013087 -
Pte15g00627 340 SUPERFAMILY beta-beta-alpha zinc fingers 248 283 IPR036236 -
Pte15g00627 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 283 IPR013087 -
Pte15g00627 340 MobiDBLite consensus disorder prediction 76 113 - -
Pte15g00627 340 Gene3D Classic Zinc Finger 241 315 - -
Pte15g00627 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Pte15g00627 340 PANTHER ZINC FINGER PROTEIN WIP2 28 336 IPR043584 GO:0003700|GO:0010468
Pte15g00627 340 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00627 Pte-Chr15 4593748 4596329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00627 1 337 C2H2 Transcription Factor Family AT3G57670 61.702 8.82e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00627 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00627 - - jre:108986074 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00627 15 4593748 4596329 Pte15g00627 15 4593748 4596329 RCT
Pte15g00627 15 4593748 4596329 Pte15g01228 15 9421403 9423973 RCT