Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00620 ATGGCCGTTCTTTCGACGGTCGCTGCCGCACCGGCGTCTCTTTACGTCGGTGACCTTCATCCTGACGTCACAGATGGCCAGCTCTTTGATGCTTTCTCCGAGTTCAAGAGTCTCGCCTCCGTCCGTGTCTGTAGGGACTCTTCGACCGGCAGGTCACTCTGTTATGGCTACGCCAACTTCATCTCTCCACAAGACGCAATTCGGGCAATTGAGGTGAAGAATAACTCATTATTGAAGGGGAAACTGATAAGGGTCATGTGGTCACGTCGTGATCCAGATGCAAGAAAGAGTGGCATAGGGAATGTGTTTGTTAAGAATTTGCCTGCATCAATTGATAACTCGGGATTACAAGAACTGTTTAAATATTTTGGCCATATTCTGTCGTGCAAAGTGGCCATGTATGATGACGGGAAGAGTAAGGGTCATGGCTTTGTCCAATTTGAGAGTGAGGAATCTGCAAATGCTGCCATTGAGAAAATGAATGGTTTTGCTGTTGGAGATAAACAAATATATGCGGGCAGATTTATAAAGAAAAGTGACCGGTCTCCACCCAGTTCTGACATTAAATTTACGAACTTGTACATGAAGAATCTGGATCATGAGGTTGGGGAGGAATTTCTGGATAAAACGTTTTCTTCGTTCGGGAAAATCGTTAGCTTGGCTGTTGCGAAGGATGAGTATGGTGCATCTAGAGGTTTTGGATTTGTAAACTTCGAGAACCCAGATGATGCTAGACAAGCAATGGAAGCCATGAACGGAGCACAACTTGGGTCAAAGATTTTGTATGTAGCAAGGGCACAAAAGAAAGCTGAGCGTGAGCACATCTTGCGGCATCACTTTGAGGAGAAGCGTAAGGAGCAAATGATGAAGTACAAGGGATCAAATCTTTATGTTAAGAACGTTGCTGACAGTGTTACTGATGAAGATCTAGAAAAGAACTTTAGCATGTGTGGCACAATCACTTCTGCAAAACTTATGCGAGACAAAAATGGAATTAGCAAGGGGTTTGGATTTGTATGTTTCTCCTCTCCTGAGGAGGCTAATAAGGCTGTGAACTCTTTTCACGGTGTTTTGTTCCATGGAAAACCCCTATATGTTGCCGTTGCTCAGAGGAAAGAGGAAAGGCAAGCACAACTGCAGATTCAGTATGCTCAGCATCTGCCTGCAATAGCTGGACCTTCCACTGCTGTAATTGCCGGTGGCTATCCTCCTTACTACTACACAGCAGCTGGTGTGGTTTCTCAAGTGCCAACTCGACCAGGGATGCTTTTACAACCTCTGGGATTGAGGCCTGGATGGAGACCTAATGGTTTCGCATCTCCAGCTAGACCATCATTCCCAGCTGTTAATGTTACTCCTAATAACACAATACAGCATAGACAAAATAGAGGCAGGGCGCATGGACATGTTGTTTCTCAGGGTAATGCTCCTGCTTCCTACATTCCAAACATGCAGCATCCTATTCAATCAGTGGCCTTTTCAAAAGAATCAACAGCAACTACTCGTCTGCGAACTGGGCATGTTAAGTATTTTCCAAATGGGCGCCAACATGAGACGGAGAAAGGATCTGGGATCTCATATGCCGCTCCCAATTCTTTAGGAGGGTCACAGGGATCGCAAATGCTGCATAGCCATCTCGCTGCCGCTTCTCCCCAGCATCAGAAACAGATACTTGGCGAGCGTCTCTATCCTCTTGTGCACGAACACAAGCCTAACCTTGCGTCAAAGATCACGGGAATGCTCTTGGAGATGGATAATAGTGAGTTGCTGCTTCTGTTAGAGTCACCAGAGTCTCTCTCAGCCAAGGTGGATGAAGCTGTGCGTGTGCTAGAGAACACCACAAAATTATCTGGCCAAGAGGCACTTCACACCATCTTCTTGTCGGCGGAGGTTGCTGTAAACTGA 1905 0.4609 MAVLSTVAAAPASLYVGDLHPDVTDGQLFDAFSEFKSLASVRVCRDSSTGRSLCYGYANFISPQDAIRAIEVKNNSLLKGKLIRVMWSRRDPDARKSGIGNVFVKNLPASIDNSGLQELFKYFGHILSCKVAMYDDGKSKGHGFVQFESEESANAAIEKMNGFAVGDKQIYAGRFIKKSDRSPPSSDIKFTNLYMKNLDHEVGEEFLDKTFSSFGKIVSLAVAKDEYGASRGFGFVNFENPDDARQAMEAMNGAQLGSKILYVARAQKKAEREHILRHHFEEKRKEQMMKYKGSNLYVKNVADSVTDEDLEKNFSMCGTITSAKLMRDKNGISKGFGFVCFSSPEEANKAVNSFHGVLFHGKPLYVAVAQRKEERQAQLQIQYAQHLPAIAGPSTAVIAGGYPPYYYTAAGVVSQVPTRPGMLLQPLGLRPGWRPNGFASPARPSFPAVNVTPNNTIQHRQNRGRAHGHVVSQGNAPASYIPNMQHPIQSVAFSKESTATTRLRTGHVKYFPNGRQHETEKGSGISYAAPNSLGGSQGSQMLHSHLAAASPQHQKQILGERLYPLVHEHKPNLASKITGMLLEMDNSELLLLLESPESLSAKVDEAVRVLENTTKLSGQEALHTIFLSAEVAVN* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00620 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pte15g00620 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 183 IPR000504 GO:0003723
Pte15g00620 634 FunFam Polyadenylate-binding protein 97 181 - -
Pte15g00620 634 FunFam Polyadenylate-binding protein 182 276 - -
Pte15g00620 634 CDD RRM4_I_PABPs 293 371 - -
Pte15g00620 634 Gene3D - 536 615 - -
Pte15g00620 634 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pte15g00620 634 Gene3D - 101 172 IPR012677 -
Pte15g00620 634 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pte15g00620 634 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pte15g00620 634 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pte15g00620 634 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pte15g00620 634 PANTHER RNA BINDING PROTEIN 12 75 - -
Pte15g00620 634 FunFam Polyadenylate-binding protein 4 96 - -
Pte15g00620 634 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pte15g00620 634 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pte15g00620 634 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pte15g00620 634 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pte15g00620 634 SMART poly_2 550 613 IPR002004 GO:0003723
Pte15g00620 634 Gene3D - 176 277 IPR012677 -
Pte15g00620 634 Gene3D - 278 382 IPR012677 -
Pte15g00620 634 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
Pte15g00620 634 SUPERFAMILY PABC (PABP) domain 542 616 IPR036053 GO:0003723
Pte15g00620 634 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Pte15g00620 634 Gene3D - 5 100 IPR012677 -
Pte15g00620 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Pte15g00620 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pte15g00620 634 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 610 IPR006515 GO:0003723
Pte15g00620 634 FunFam Polyadenylate-binding protein 536 621 - -
Pte15g00620 634 FunFam Polyadenylate-binding protein 277 385 - -
Pte15g00620 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pte15g00620 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pte15g00620 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Pte15g00620 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pte15g00620 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Pte15g00620 634 SUPERFAMILY RNA-binding domain, RBD 288 381 IPR035979 GO:0003676
Pte15g00620 634 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00620 Pte-Chr15 4552982 4557118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00620 12 632 Eukaryotic Initiation Factors Gene Family AT2G36660 52.615 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00620 K13126 - qsa:O6P43_010206 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00620 15 4552982 4557118 Pte15g00620 15 4552982 4557118 RCT