Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00589 ATGACGTATAAAACCGTTAAAATGGTGATTGAGGATCCGCCGGCTGCTTGCACCTTGCTTCTGGTCTATACCCACTCGAGCTCTTCAGTTGGCAGCCACTCAATTCAACAAAGAAATATGAAGGTGGTAGCAGCTTATTTGTTGGCTGTATTGGGAGGTAACACCAGCCCTTCTGCTGAGGATCTCAAAGGCATTCTCGGGGCTGTTGGAGCAGATGCTGAAGAAGATAGAATTGAGTTTTTGTTATCAGAAGTCAAGGGCAAGGATATAACAGAACTCATTGCTGCTGGACGGGAGAAATTAGCGTCCGTACCTAGTGGTGGCGGTGCTGCAGTTGCAGTGGCTGCCAGTGCTGGTGGTGTCGGGGGTGCTGCTGCTGCTCCAGCTGCAGCTGAGTCAAAGAAAGAAGAAAAAGTGGAGGAGAAAGAGGAATCCGACGATGACATGGGCTTCAGTCTCTTCGATTAA 468 0.4915 MTYKTVKMVIEDPPAACTLLLVYTHSSSSVGSHSIQQRNMKVVAAYLLAVLGGNTSPSAEDLKGILGAVGADAEEDRIEFLLSEVKGKDITELIAAGREKLASVPSGGGAAVAVAASAGGVGGAAAAPAAAESKKEEKVEEKEESDDDMGFSLFD* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00589 155 CDD Ribosomal_P2 40 155 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte15g00589 155 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 40 155 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte15g00589 155 Hamap 50S ribosomal protein L12 [rpl12]. 41 155 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pte15g00589 155 Pfam 60s Acidic ribosomal protein 56 154 - -
Pte15g00589 155 FunFam 60S acidic ribosomal protein P2 37 98 - -
Pte15g00589 155 MobiDBLite consensus disorder prediction 126 155 - -
Pte15g00589 155 Gene3D - 39 98 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00589 Pte-Chr15 4339580 4342249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00589 40 156 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 65.812 3.24e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00589 K02943 - egr:104452151 129.413