Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00564 ATGTCCATGAACCAACGTTACTCTTCTGATAATCCATGGTCGAATACTCAACAAGAACATCAACACAAATTCACGTCAATGCAATCACCTCAAAACCTTACCGATTCTTGTCGATCAGATCACTCTTGGCCTCCTTCTCAACTCTATCACCCCCAGAAAGCCTCAATCAATTTGCCCAATCCTCGTGACTCGTATACTGCTTCCAGCTACGAGCACCACCAGCAGATCACCTCTCCTTCTTTCAACCTAAACCAAGAGGAAGATGACGAAGATGATCCTGACGACAGCAGTCAGAACCCCACCACGCAGGAGGACCCATATAACCCAGCTGACAGACAAGCTGCTATTTCAAAAGAAAAAGAACCCATGTTCGAGAAGCAGTTGACACCAAGCGATGTGGGGAAGCTCAATCGCCTCGTCATTCCGAAACAGCAAGCGGAGAAGTACTTCCCACTTAGCGGTGAAACTGCCGAGCATAAGGGCCTAGTACTGAGTTTCGAGGATGAGTGGGGGAAGTGTTGGCGGTTTCGCTATTCCTACTGGAATAGCAGCCAGAGCTATGTACTCACAAAAGGTTGGAGCCGTTACGTGAAGGAGAAGCGGCTTGATGCAGGCGATGTCGTTTTATTTGAAAGGGACCCAAACGACTACCAGCGGCTATTTATCTGTTGCAATCGGCGTCGGCAGCACAGCGCGTCGGTGGTTGCGCACGTCAGCGTCGCGGCGGACAACATGGATATCCATAGCGTCCGTGGGGAAGCGGGAGTGGGGATGACCAGAGTCTTCTATCCTGCGCATCCTTATCCTACGCGTCATCATCCCTTGCCAAACCAACCTGGATGTCTTCATGCAGGTAGTAGAGGAACCCAAGCCCATAGCCGAACAAAGTCGGTGGGAAGCAGCTCCAGTAAGGTATTGAGACTGTTTGGTGTGAATATGGAGTGCCAACCTGAGAATGGGTCAGAGGTACCCACACCATCTATGTCCAGCTATGCTTCATCAGCCATCCACCTGCAGGATGATTACAAACAACCTTCTTATCATCCACAAACTACTCACGAGCACATGGTACGTCAACGTCAAATTGCTAAACAAACTCTCCACCTCTAG 1110 0.4982 MSMNQRYSSDNPWSNTQQEHQHKFTSMQSPQNLTDSCRSDHSWPPSQLYHPQKASINLPNPRDSYTASSYEHHQQITSPSFNLNQEEDDEDDPDDSSQNPTTQEDPYNPADRQAAISKEKEPMFEKQLTPSDVGKLNRLVIPKQQAEKYFPLSGETAEHKGLVLSFEDEWGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERDPNDYQRLFICCNRRRQHSASVVAHVSVAADNMDIHSVRGEAGVGMTRVFYPAHPYPTRHHPLPNQPGCLHAGSRGTQAHSRTKSVGSSSSKVLRLFGVNMECQPENGSEVPTPSMSSYASSAIHLQDDYKQPSYHPQTTHEHMVRQRQIAKQTLHL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00564 369 SUPERFAMILY DNA-binding pseudobarrel domain 120 229 IPR015300 -
Pte15g00564 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 325 IPR044800 GO:0003700
Pte15g00564 369 Pfam B3 DNA binding domain 124 226 IPR003340 GO:0003677
Pte15g00564 369 SMART B3_2 124 227 IPR003340 GO:0003677
Pte15g00564 369 CDD B3_DNA 122 216 IPR003340 GO:0003677
Pte15g00564 369 MobiDBLite consensus disorder prediction 1 109 - -
Pte15g00564 369 Gene3D - 113 238 IPR015300 -
Pte15g00564 369 MobiDBLite consensus disorder prediction 1 83 - -
Pte15g00564 369 ProSiteProfiles B3 DNA-binding domain profile. 124 228 IPR003340 GO:0003677
Pte15g00564 369 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00564 Pte-Chr15 4150830 4154185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00564 120 316 RAV Transcription Factor Family AT5G06250 49.761 5.10e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte15g00564 B3 2.1e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00564 K09287 - jre:108990503 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00564 15 4150830 4154185 Pte15g00564 15 4150830 4154185 RCT