Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00549 ATGGACATGATTTTCCTTAACATTTATCTGATTTCGTCCACAGTATTTCGTTTAGAAAGCGTCGTCGCCAAACATCAATCTCAGAAGTGGATGTCATGTTTTGATGGGTTAACTGAAACCACCCAGAATTCCAAGCGAAGCAACCACACGGAAAACAATCTAAATTCCATGGCGACGTACTTCCATGGCAATTCAGAAATCCAAGCAGCCGATGGCCTTCAAACACTTGTGCTCATGAACCCTGGCTTCATGCAATACACCGACACGCCGACGCCGCATGCCAGCAACCTTGTTTTCCTCAACTCAGCTCGTACCAACAACTCAGTCAATCCTCCAAATCCCTCAAACGCGCCTCCCGCTCACATGCAGCAGTTTGTTGGTATCCCTCTGCAGGCATCTGCATCCCAAGACCCTAACCATCCCCAATCTCACCCGCAATTGGACGTTGCTGCGTTGCATGGATTTGCTCCACGCATGCAATACAACCTTTGGAATACAATCGATCCAGGTGCGGCGGCGCGTGACATACCACGCGCTCAGCAAGGACTGTCTTTAAGTCTTTCTTCTCAGCAGGCTGGGTATGGGTCTCTCCGGGTTGATCGTGAGGCAGTTTCACATCAGGGTCCCGTGATGTCTGGAGATGACGTGCGTGTGTCAGGTGGGTCATCTTCGTCCGCTTCCGGGGTTACCAATGGGGTTTCTGGAATGCAGAGTGTTCTTCCGTTGAGCACAAAGTATCTAAAAGCAGCACAAGATCTGTTAGATGAGGTTGTCAACGTCAATAGTGGAAACTTCGGGAGCGAGTCTGAATTCGGTAAGAAGAGTACCAGTGCCCGGAACAAGTTGATGGGGGAGTCTTCCACTGCTGCAAGTGGAGATGGCTTAACTGGCGTGGAGGCAAGCGTGAAGCCTTGCAGTGAGCTATCAACTGCAGAGAGGCAGGAAATTCAGATGAAGAAGGCGAAGTTAATCAATATGCTTGATGAGGTGGAACAAAGGTACAGGCAGTACCACCACCGAATGCTGATTGTAATATCTTCATTTGAGCAAGCCGCTGGAATTGGCTCTGCAAGGACATATACTGCTAGTGCACTGCAAACTATTTCGAAGCAGTTTCGTTGCTTGAAGGATGCAATAACTGGACAAATCAAAGCTTGCAATAAGAGCCTAGGCGAAGAAGATTGCCTAATTGGGGGCAGAATTGAAGGTTCGCGGCTGAAATTTGTGGACAACCATTTTAGGCAACAACGAGCTCTTCAGGAGTTGGGAATGATTCAGCACAATGCATGGAGGCCTCAGAGAGGATTGCCAGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCACTTCCTTCACCCTTACCCCAAGGACTCGGACAAACACCTGCTTGCCAAACAAACAGGACTTACTAGAAGCCAGGTGTCTAATTGGTTCATCAATGCTCGAGTTCGATTGTGGAAACCAATGGTGGAAGAGATGTATATGGAGGAGATGAAGGAGCTAGAGCAGAATGGATCAGAGGACAAGACAAGCAAGAGCAGTGAAGATGTTACTCCGAAATACAATGCCACACTGGACAAGATTGGTGGGACTGAAAATCAACCCAGGATTTTCAATTCCAAACATGACAACTCCATAAACCAGAACTCACCAACTACATGTTCTGTTTCAAAAGCATCGACATCAACATCTCCAGTTGCAGGAAATGCTCACAACCAATCAGGGTTTAATCTTATCGGGTCGTCTGAGTTCGACGGGATCACTCAAGGTAGCCCCAAAAAACCGAGGCAACATGAAATGCTTCATTCCCCAAATGATGTAGACGAGGATTCCATGTCAATTAAATTTGGAGATGAAAGGCAGAGTAGAGATGGCTACTCATTCATGGGAAGTCAAAGTAATTTCATTGCTGGTTTTGGGCAGTACCCGATTGCTGAAATTGGAAGGTTTGATGCAGAGCAATTCCCACCTAGCTTTTCTGGTAATGGCGTATCACTTACTCTTGGACTTCCACACTGTGAAAATATTTCATTGTCAGGAGCACACCAGACGTTTCTCCCCAACCAGAACATGCAACTTGGACGAAGAGTAGATATGGGTGAACCAAATGAGTTCGGTGCCATGAGTACATCTGCAGCACATTCTTCATCCATGTACGAGAATATGAACCTGCAAAACCCAAAGAGATTTGCAGCACAGCCATTGCCTGACTTTGTGGTCTAA 2229 0.4693 MDMIFLNIYLISSTVFRLESVVAKHQSQKWMSCFDGLTETTQNSKRSNHTENNLNSMATYFHGNSEIQAADGLQTLVLMNPGFMQYTDTPTPHASNLVFLNSARTNNSVNPPNPSNAPPAHMQQFVGIPLQASASQDPNHPQSHPQLDVAALHGFAPRMQYNLWNTIDPGAAARDIPRAQQGLSLSLSSQQAGYGSLRVDREAVSHQGPVMSGDDVRVSGGSSSSASGVTNGVSGMQSVLPLSTKYLKAAQDLLDEVVNVNSGNFGSESEFGKKSTSARNKLMGESSTAASGDGLTGVEASVKPCSELSTAERQEIQMKKAKLINMLDEVEQRYRQYHHRMLIVISSFEQAAGIGSARTYTASALQTISKQFRCLKDAITGQIKACNKSLGEEDCLIGGRIEGSRLKFVDNHFRQQRALQELGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHLLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKELEQNGSEDKTSKSSEDVTPKYNATLDKIGGTENQPRIFNSKHDNSINQNSPTTCSVSKASTSTSPVAGNAHNQSGFNLIGSSEFDGITQGSPKKPRQHEMLHSPNDVDEDSMSIKFGDERQSRDGYSFMGSQSNFIAGFGQYPIAEIGRFDAEQFPPSFSGNGVSLTLGLPHCENISLSGAHQTFLPNQNMQLGRRVDMGEPNEFGAMSTSAAHSSSMYENMNLQNPKRFAAQPLPDFVV* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00549 742 SMART prehox3 234 381 IPR006563 -
Pte15g00549 742 SUPERFAMILY Homeodomain-like 431 497 IPR009057 -
Pte15g00549 742 SMART HOX_1 430 494 IPR001356 GO:0003677
Pte15g00549 742 Coils Coil 313 340 - -
Pte15g00549 742 Pfam Associated with HOX 243 380 IPR006563 -
Pte15g00549 742 Gene3D - 423 503 - -
Pte15g00549 742 MobiDBLite consensus disorder prediction 207 230 - -
Pte15g00549 742 MobiDBLite consensus disorder prediction 597 615 - -
Pte15g00549 742 FunFam BEL1-like homeodomain protein 9 433 495 - -
Pte15g00549 742 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 514 - -
Pte15g00549 742 Pfam Homeobox KN domain 447 486 IPR008422 GO:0003677|GO:0006355
Pte15g00549 742 MobiDBLite consensus disorder prediction 589 615 - -
Pte15g00549 742 ProSiteProfiles 'Homeobox' domain profile. 427 490 IPR001356 GO:0003677
Pte15g00549 742 CDD homeodomain 430 490 IPR001356 GO:0003677
Pte15g00549 742 MobiDBLite consensus disorder prediction 541 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00549 Pte-Chr15 4019492 4024630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00549 57 743 Homeobox Transcription Factor Family AT2G35940 47.733 1.83e-176 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte15g00549 POX 1.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00549 - - qsa:O6P43_006028 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00549 15 4019492 4024630 Pte15g00549 15 4019492 4024630 RCT