Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00548 ATGGAAAGAGGATGGAAGTCTAATGCTGAGATATCACCCAGCTGTCCCAGGTGTGGTTCTTCAAACACAAAATTTTGCTACTACAATAATTACAGCTTAACACAGCCACGATACTTTTGCAAAGGCTGTAGGAGGTACTGGACTAAAGGCGGCTCCCTCCGAAATGTGCCGGTTGGTGGCGGTTGCAGAAAGAACAGAAAGAGTAGCAAGTCTGTTAGGTCCTCATCAAGTAATGGTGATTTCATCCCCTCCAGGAGTTTATCTTATGCTGGTGTTGCCAATATCCCAATGGTGCAGCATATTGGCCCCAGTAGTACCGGAAATCTTTTGATGGAATCCACTATCTCATCTACGATGTCTGATGATGGTTCGAACATTGATCTTGCACTTGTTTATGAGAATTACTTAAATCCCAAGACAACAGATACGAGGAGAGATTTTGAGACGCTAGAACTGCATAAAGACAGTGACCATCCTCCGATAGAGCACTATTCAAGTTCGTCAAACACAAATGTTGGCTCGAGTAGTACTTTACCCGAAGATGTTGGTGTTTCCGAAAGCCTCACTACTTTTGAGCAGTCGACTAAGTCACCATTCCTTCAGGTTGATCAGATGTTCCTCTCTGGGTCTAGCTCAGTTCAGAAACATCAAAATACAATGAAACATTACACTCCCAGTTATGATGGTATCCATTTTGAAATGCCACCTTTGCCGGGGGAAGAAGCCTCACAGGTATTAATGCGGTCCAACACTGAGATGATGCTAAACCATGCATCACCCACTCGACAATCGCCAGGGGCCGTTGATATTCAAGATGCAGATATGTTGATTGGTAACTGGAGTCCATTCCGTATGTAA 858 0.4406 MERGWKSNAEISPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRKSSKSVRSSSSNGDFIPSRSLSYAGVANIPMVQHIGPSSTGNLLMESTISSTMSDDGSNIDLALVYENYLNPKTTDTRRDFETLELHKDSDHPPIEHYSSSSNTNVGSSSTLPEDVGVSESLTTFEQSTKSPFLQVDQMFLSGSSSVQKHQNTMKHYTPSYDGIHFEMPPLPGEEASQVLMRSNTEMMLNHASPTRQSPGAVDIQDADMLIGNWSPFRM* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00548 285 MobiDBLite consensus disorder prediction 162 181 - -
Pte15g00548 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 204 IPR045174 GO:0003700|GO:0006355
Pte15g00548 285 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Pte15g00548 285 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Pte15g00548 285 MobiDBLite consensus disorder prediction 58 79 - -
Pte15g00548 285 MobiDBLite consensus disorder prediction 155 181 - -
Pte15g00548 285 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00548 Pte-Chr15 4016086 4017839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00548 7 139 C2C2-Dof Transcription Factor Family AT3G52440 55.556 1.04e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte15g00548 zf-Dof 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00548 - - qsa:O6P43_006030 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00548 15 4016086 4017839 Pte15g00548 15 4016086 4017839 RCT