Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00547 ATGAACGACTTGTTTTCAGGCTCGTTCGCTCGCTTTCGTAGCGAGGAAGCCTCGCCGGATCGTCATGATATCGAGATGGGTGCGGCGGCTCCGGCAGGAGTCAATCTGGACAAGTTCTTTCAGGACGTTGAGTCGGTCAAGGAGGAACTGAAGGAGCTTGAAAGGATTAGTGTGAGTTTACAGAACTCTCATGAACAGGGCAAGACCCTTCATCATGCTAAAGCTGTCAAAGACCTCAGGTCTAGTATGGAAAATGACATTGGTCTCGCTCTGAAGAAGGCTAAGGTCATCAAGGTCCGATTGGAGGCATTGGATCGATCTAACGCTGCAAATCGGAGCTTGCCTGGTTGTGGACCTGGGTCATCTTCGGATCGTACTCGGACCTCTGTGGTCAACGGGTTGAGGAAGAAGTTGAAGGACCAGATGGAGAGTTTTAATAATCTTAGACAGCAGATATCATCAGAGTACAGAGACACCGTGCAACGTCGGTATTTCACAGTTACCGGTGAGCAGCCGGATGAGAAGACCGTTGACATGTTGATCTCTACAGGTGAGAGCGAGACTTTTCTGCAAAAAGCCATACAAGCACAAGGTAGAGGTAGGATCTTAGACACGATCAACGAAATTCAAGAGAGGCATGATGCTGTGAAAGAAATAGAGAAGAATCTTCAGCAGTTGCATCAAGTGTTCCTTGACATGTCAGTTTTGGTTCAAGCTCAAGGTGAGCAGCTAGATGATATAGAAAGCCATGTAGCAAGAGCCAATTCATTCGTGAAAACTGGAACGGAGAGATTAACTGTGGCGAGGAAACACCAGAAGAATACCAGGAAATGGACATGTTTTGCTATAATCCTTCTTGCGATTATAATATTATTTGTGGTACTCTTCACTGTGAAACCATGGCAAAACAGTGGCGGCAGCGGAAATAGTAACCCTCCTGCAACTCCCCAACCTCAAACTCCTCCAGCACCTACTCAATCTTAG 984 0.4675 MNDLFSGSFARFRSEEASPDRHDIEMGAAAPAGVNLDKFFQDVESVKEELKELERISVSLQNSHEQGKTLHHAKAVKDLRSSMENDIGLALKKAKVIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDQMESFNNLRQQISSEYRDTVQRRYFTVTGEQPDEKTVDMLISTGESETFLQKAIQAQGRGRILDTINEIQERHDAVKEIEKNLQQLHQVFLDMSVLVQAQGEQLDDIESHVARANSFVKTGTERLTVARKHQKNTRKWTCFAIILLAIIILFVVLFTVKPWQNSGGSGNSNPPATPQPQTPPAPTQS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00547 327 Gene3D - 34 166 - -
Pte15g00547 327 PANTHER SYNTAXIN 47 289 IPR045242 -
Pte15g00547 327 Coils Coil 36 63 - -
Pte15g00547 327 Gene3D - 203 299 - -
Pte15g00547 327 Coils Coil 131 155 - -
Pte15g00547 327 Coils Coil 206 226 - -
Pte15g00547 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Pte15g00547 327 FunFam Syntaxin 132 199 299 - -
Pte15g00547 327 CDD SynN 36 193 IPR006011 GO:0016020
Pte15g00547 327 SMART tSNARE_6 201 268 IPR000727 -
Pte15g00547 327 MobiDBLite consensus disorder prediction 304 327 - -
Pte15g00547 327 Pfam SNARE domain 242 294 IPR000727 -
Pte15g00547 327 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Pte15g00547 327 CDD SNARE_syntaxin1-like 205 265 - -
Pte15g00547 327 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Pte15g00547 327 SMART SynN_4 31 157 IPR006011 GO:0016020
Pte15g00547 327 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00547 Pte-Chr15 4006795 4009097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00547 28 327 SNARE and Associated Proteins AT3G11820 71.895 4.25e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00547 K08486 - qsa:O6P43_006031 499.975