Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00546 ATGGCCGCCACAACTACAGCCTCCTCTTCAGTCTGCAATAGAATACACAATATCTGCTTCACTCTCCACTCTTCCATTTCTATCCCTACCAACTTATCGCAAAGACCGTCTCCAAAACCTCTAAACCACGGCCTTAAACTACACCAACTTTGTATGCCCTCACCTCTCATTTCTCTTCGCAGAGCCTCTGCACCTTTCGATGGCTTTCAAGTATCAGCATACGGGACTGGCACCCAAGGACTCTCAGATTGGAAACCCGTGGAGAAAAATTTAGAACGGAGCAAGGCAGGCGAAAAACCAGCGGATTCAGATGAAGATCGGAAGATTTTCGTAGGGAATTTGCCCTACACTGTAACTTCTTCCCAGTTGGCTGAGATTTTTGAAGTGGCTGGTACTGTGAAGAGCGCTGAAGTTATATATGATCGACTCAAGCGTTTAAGCCGAGGATTCGGCTTTGTTACAATGGGGAGCGTTCATGAGGCTGAAGAAGCAATCCGGAAGTTTGATGGCTCTGTGGTGGCAGATCGAACTCTCAAGGTTAATTTTCCAGAAGTGCCAAGAGGAGGAGAAAGATTGGCGATGAGACCAAAGATCATGCGGGACAGTCTGACCTTTGTAGACAGTCCGCACAAGATCTATGCTGGAAATCTTTCTTGGTATGTCACCTCCCACAGTCTTAGAGATGCTTTTGCTAATCAACCAGGGTTGTTGAGTGCCAGAGTCGTCTATGAGAGGGACACAGGAAGGTCTAAAGGTTATGGATTTGTTAGTTTTGAAACTGCTGAAACTGCAGAAGCGGCTTTGGATGCCATGGAAGGCGCGGAGCTTGAAGGCCGGCCTTTAAAATTGAACTTGGCGATAAACAGAATCCCTTCTGCATCCAGAGAAAACTCAGACAAGAGCCTTGAAGAAAGCGACAGGTTGCTTTCCAGCTTTAGCTCTTGGAAAAATGGTTCCTATTGA 963 0.4663 MAATTTASSSVCNRIHNICFTLHSSISIPTNLSQRPSPKPLNHGLKLHQLCMPSPLISLRRASAPFDGFQVSAYGTGTQGLSDWKPVEKNLERSKAGEKPADSDEDRKIFVGNLPYTVTSSQLAEIFEVAGTVKSAEVIYDRLKRLSRGFGFVTMGSVHEAEEAIRKFDGSVVADRTLKVNFPEVPRGGERLAMRPKIMRDSLTFVDSPHKIYAGNLSWYVTSHSLRDAFANQPGLLSARVVYERDTGRSKGYGFVSFETAETAEAALDAMEGAELEGRPLKLNLAINRIPSASRENSDKSLEESDRLLSSFSSWKNGSY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00546 320 SMART rrm1_1 108 181 IPR000504 GO:0003723
Pte15g00546 320 SMART rrm1_1 211 284 IPR000504 GO:0003723
Pte15g00546 320 MobiDBLite consensus disorder prediction 294 320 - -
Pte15g00546 320 SUPERFAMILY RNA-binding domain, RBD 100 183 IPR035979 GO:0003676
Pte15g00546 320 SUPERFAMILY RNA-binding domain, RBD 207 294 IPR035979 GO:0003676
Pte15g00546 320 CDD RRM2_NsCP33_like 211 286 - -
Pte15g00546 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Pte15g00546 320 PANTHER OS02G0815200 PROTEIN 91 289 - -
Pte15g00546 320 Gene3D - 76 191 IPR012677 -
Pte15g00546 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Pte15g00546 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
Pte15g00546 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Pte15g00546 320 Gene3D - 200 307 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00546 Pte-Chr15 4004318 4006598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00546 109 289 Eukaryotic Initiation Factors Gene Family AT3G16380 31.492 4.65e-14 70.9