Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00545 ATGGCCATGCAAACTGTTTGTCTCAAAGAAAAAGAAGGGACTGCCCGTAAACCCTTTGGACAGCTGTCATATGCTCCGTCACCCCCTTTCTGGAGTGGCTTTGGATCCCAACTGGATTATGGAGAATCTTATAACCATTCAGAGACTTTTTCGCTGGAGTGTGGGGACCAACTTACAGCATTCACTAAGAAAGCAGGGAGAGGTGGTGTGCAAGGACCTGATAAGGAAAAAACCACTACCTTCACTATATTTCCCGGTGACGCACAGCAACCTAACTCAACTATCTACCTGCAATCATCTATTCCTGATCACAATGCACGGTTTGAACTGGGATTTGGTCAGCCTTATGTGGATCATTGTTATGGATTCTTCTCCGCTTACCAACCTGAAGTTGCGGGCCGCATTATGCTACCACTGAACTTGATGGCGGCCGATGATGTACCGATTTATGTAAATGCTAAGCAGTACCATGGAATAATCAGACGCCGGCAGTCCCGGGCAAAGGATGTATTAAGGAACAAATTGACTAAAGTTCACAAGCCTTATAGGCACGAATCACGCCATCTTCATGCAATGCGCCGACCAAGGGGATGTGGCGGCCGTTTCCTGAACACAAAGAGCTCTAATGATGGAAAGGTAGTCAGCAATGAAGCAAACAAAAATACTGATGGAAAAATGACGCACACTGCCTTGCAGAATTCTGTATTCCTTTACAGTGGAAGTATGGGGAACAAAACTGTAAACAAACAAGTTTCGGAGAGCACTGGTTCTCATAGTTCTGAGTTCCAACAATCTGATGGTGGTACTTTAAATTCATCAAAGAATACAAATGGAAGCAATTCAAACATTTCAGGATCAGAGGTGACAAGCATGTATTCAAGGGGAGAGCTTAATTGCTTTCAGGTCAAGCCTCTTGGCTTGTCTATCCACTCTGGAGCTGAAGTGGCGGACTATGGGCATGGCATTGTGATGCCCTCAAGGTGGGGGGTAGCAGTGGATAACTGCTACCACCTTGAAAAGGTTTGA 1026 0.4542 MAMQTVCLKEKEGTARKPFGQLSYAPSPPFWSGFGSQLDYGESYNHSETFSLECGDQLTAFTKKAGRGGVQGPDKEKTTTFTIFPGDAQQPNSTIYLQSSIPDHNARFELGFGQPYVDHCYGFFSAYQPEVAGRIMLPLNLMAADDVPIYVNAKQYHGIIRRRQSRAKDVLRNKLTKVHKPYRHESRHLHAMRRPRGCGGRFLNTKSSNDGKVVSNEANKNTDGKMTHTALQNSVFLYSGSMGNKTVNKQVSESTGSHSSEFQQSDGGTLNSSKNTNGSNSNISGSEVTSMYSRGELNCFQVKPLGLSIHSGAEVADYGHGIVMPSRWGVAVDNCYHLEKV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00545 341 MobiDBLite consensus disorder prediction 247 287 - -
Pte15g00545 341 MobiDBLite consensus disorder prediction 194 226 - -
Pte15g00545 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 293 IPR001289 GO:0003700|GO:0006355
Pte15g00545 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 148 202 IPR001289 GO:0003700|GO:0006355
Pte15g00545 341 Gene3D - 145 207 - -
Pte15g00545 341 MobiDBLite consensus disorder prediction 202 226 - -
Pte15g00545 341 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700|GO:0006355
Pte15g00545 341 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700|GO:0006355
Pte15g00545 341 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700|GO:0006355
Pte15g00545 341 SMART cbf3 144 205 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00545 Pte-Chr15 3992900 3998766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00545 1 334 CCAAT-HAP2 Transcription Factor Family AT3G05690 37.500 6.14e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte15g00545 CBFB_NFYA 8.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00545 K08064 - qsa:O6P43_009681 348.591