Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00542 ATGAATAACACATCTGGCTCTGGTTCGCTACTGGGTTCGGACTCTGATGGATTCCTGGGTTCTAGCAATCTTGGTGGTTTTGGCTTTGGCATAGGATTGTCAGTTGGAGCTCTTCTCCTCATTACAACGATCACGCTTGCTTCTTATTTCTGCACTAGGACACAGCAGTCAACGACCCGATCACGATCACCGCGGAGAATTTCGCAGATGGCTCTTGAATCTCCACAGCATTGTGCTGTTGATATAGGCCTAGATGAAGCCACGATAATGAGCTATCCAAAGCTGCCATACTCTGAAGCCAAGATCCAAAAATCAGACACTACAGCATCGTGTTGTTCGATATGTCTGGCTGATTACAAGAGCACAGATATGCTTAGGCTGTTGCCTGAGTGTGGTCACCTCTTCCATCTCAAGTGTGTAGACCCGTGGTTAAGACTGCACCCTTCGTGTCCTGTCTGCAGAACATCTCCCATTCCAACACCCGTTGCAACCCCTTTGGCTGAAGTGGTTCCATTGGCAACGACAAGAAGGTATTCCTGA 540 0.4815 MNNTSGSGSLLGSDSDGFLGSSNLGGFGFGIGLSVGALLLITTITLASYFCTRTQQSTTRSRSPRRISQMALESPQHCAVDIGLDEATIMSYPKLPYSEAKIQKSDTTASCCSICLADYKSTDMLRLLPECGHLFHLKCVDPWLRLHPSCPVCRTSPIPTPVATPLAEVVPLATTRRYS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00542 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Pte15g00542 179 SUPERFAMILY RING/U-box 90 160 - -
Pte15g00542 179 CDD RING-H2_EL5-like 111 154 - -
Pte15g00542 179 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 168 IPR045899 -
Pte15g00542 179 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pte15g00542 179 Pfam Ring finger domain 112 154 IPR001841 -
Pte15g00542 179 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00542 Pte-Chr15 3952753 3953364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00542 1 175 C3H Transcription Factor Family AT2G35910 55.682 1.38e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00542 - - qsa:O6P43_009684 218.009