Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00534 ATGCATATTTTCAAGAGCGTATTGTCTGGAAATATTAAGAAGAGGAAGACAAAGAGAAACAGACGCAAGCTCAGAAGCCAAGCTATTCCACGGAAGCACAAGTCGATTTCAAGTAGGCAAGAACTTCCACATCGGGGTGATGAGGAGGAGGAAGAGGAACACCGGATCTTGGATGATATCGATGAAGAAGAAGAAGCATTCGACCTCAAAAACTCTGCTCCATCTCAAACCTGTGGGGTTCAACCATTGGGCAACCTTTATTTCACCCCAGGTGGATTCAATTCGAGAAACACCGGTTTGGGTAATTTACACACTCTTACAGATGAGCTTGTGCTCGATATTCTTGGGTTATTGGAAGCCACCCACTTGGGGTTTTTAGCTACTGTGAGCAAGGCATGTTATGTATTCAGCAACCATGACCCGCTTTGGAGGAACCTAGTGTTGGACAATCTCGATGGAGGTTTTAGGTTTAAGGGGTCATGGAAGTCTACTTACGTTGCTGCTAATTATCCAAATTTTATTACTTTGAATAATGGAGCCGCAAATGTGAAAGTTACGAACTTCTATTCCGATTATCTCTTCCAAAGTTGGTTGTGTGCTAATCTTGAAATGAAATCGGAATGGCTGGAAAGAGATAACATAATTAGAAGAAAAAGTATATCTGTTGAAGAATTCATATTGAACTTTGAGGAGCCTAATAAGCCAGTGTTAATGGAAGGTTGTTTAGATAATTGGGCTGCATTGAAAAAATGGGATAGAAAGTATTTGGTTCAATTGTGTGGTGATATGAAGTTTTCTGTTGGTCCTGTAAATATGAAGCTTGAAGAGTACTTTTGTTACTCTGATCAAGCGAGGGAAGAGAGGCCATTGTATTTATTTGACCCGAAATTTGCTGAAAAAGTTCCAAAATTGGGTTTTGAATACGAAGTTCCAGTTTATTTTCAGGAGGACTTGTTCAGTGTTTTGGGTGATGAGAGACCTGATTACAGATGGATTATTGTTGGACCAGCTGGATCTGGCTCCTCGTTCCACATTGATCCAAATTCGACTTCAGCTTGGAATGCAGTCATCAAAGGCTCCAAGAAGTGGGTATTATTCCCTCCTGATATGATACCACCAGGGGTGCATCCTAGCCCTGATGGGGCAGAAGTAGCATGCCCAGTTTCAATAATCGAGTGGTTCATGAACTTTTATGGTGCTACAAAAAGTTTGAAGAGGAGACCTATAGAGTGTATCTGCAAGGCCGGTGAGGTGATCTTTGTGCCTAATGGTTGGTGGCATCTGGTAATTAACCTTGAAGAATCTATTGCCATCACCCAGAATTACGTCAGCAGAAGAAACTTATTGAATGTCATGGATTTTCTGAAGAGGCCAAATGCAAGTGAACTCGTATCTGGGACTAGAGATCGTGTTAATTTGCACAAGAAGTTTAAGAATGCCATCGAGAGTTCTTTTCCTGGAATCATCGATAAGCTTGAAGAAGAGAAGAAAACACAGGAAAGAAAGGTTTCATTCTGGGACTCTGTCACAGACTCCAAGGTGGGAGCATTCAAGTTTTCTTTCTAG 1566 0.4132 MHIFKSVLSGNIKKRKTKRNRRKLRSQAIPRKHKSISSRQELPHRGDEEEEEEHRILDDIDEEEEAFDLKNSAPSQTCGVQPLGNLYFTPGGFNSRNTGLGNLHTLTDELVLDILGLLEATHLGFLATVSKACYVFSNHDPLWRNLVLDNLDGGFRFKGSWKSTYVAANYPNFITLNNGAANVKVTNFYSDYLFQSWLCANLEMKSEWLERDNIIRRKSISVEEFILNFEEPNKPVLMEGCLDNWAALKKWDRKYLVQLCGDMKFSVGPVNMKLEEYFCYSDQAREERPLYLFDPKFAEKVPKLGFEYEVPVYFQEDLFSVLGDERPDYRWIIVGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPDMIPPGVHPSPDGAEVACPVSIIEWFMNFYGATKSLKRRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVMDFLKRPNASELVSGTRDRVNLHKKFKNAIESSFPGIIDKLEEEKKTQERKVSFWDSVTDSKVGAFKFSF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00534 521 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 100 519 - -
Pte15g00534 521 MobiDBLite consensus disorder prediction 34 51 - -
Pte15g00534 521 ProSiteProfiles JmjC domain profile. 299 459 IPR003347 -
Pte15g00534 521 SUPERFAMILY Clavaminate synthase-like 213 457 - -
Pte15g00534 521 FunFam F-box protein At1g78280 194 444 - -
Pte15g00534 521 MobiDBLite consensus disorder prediction 9 32 - -
Pte15g00534 521 Pfam Cupin-like domain 224 442 IPR041667 -
Pte15g00534 521 Coils Coil 489 509 - -
Pte15g00534 521 Gene3D - 96 172 - -
Pte15g00534 521 SMART cupin_9 290 459 IPR003347 -
Pte15g00534 521 MobiDBLite consensus disorder prediction 1 55 - -
Pte15g00534 521 Gene3D Cupin 190 444 - -
Pte15g00534 521 SUPERFAMILY F-box domain 97 166 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00534 Pte-Chr15 3852528 3854775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00534 89 448 Glycosyltransferase AT1G78280 37.466 2.92e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte15g00534 Cupin_8 9.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00534 - - qsa:O6P43_009409 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00534 15 3852528 3854775 Pte15g00534 15 3852528 3854775 RCT