Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00527 ATGAGAGGTAGGAGCTACAGTTACAGTCCCTCTCCTCCTCCAACGGGTTACAGAAGGAGATATCGTAGCCCAAGCCCAAGAGGTCGATATGGAGGACGTGGCAGAGATCTGCCAACAAGTCTCCTAGTGCGCAACCTCCATCGCGACACGAGGTCTGAAGATCTTCAAAGACCATTTGGACAGTTTGGACATCTCAAGGACATATATCTGCCTCGGGATTACTACACAGGGGAGCCTCGTGGTTTTGGTTTTGTCCAATATATGGACCCTGCTGATGCTGCTGATGCCAAATATCATATGGATGGTCAAATCCTCCTTGGTCGTGAACTAACTGTCGTGTTTGCTGAGGAGAATAGGAAAAAGCCTTCCGAAATGAGGGCAAGAGAACGAGGGAGGAGCCGCCATGATAGGCGATCCCCCTATTCTCGCGCACCAGGCTATGGCCGAGCTTACTCAAGTAGTCCAGATTACACCCCTTCACCCAGGAGACGAAGACATTATTCCAGGTCATACTCATCTAGGGAGAGAAGGTACAGAGAGCGGTCGTATTCAAGATCACCTTATGGATCGAGGATGCGTAGTAGCAGCAGGAGTCGCAGTCTAGACTACTCTAGTTAA 618 0.5 MRGRSYSYSPSPPPTGYRRRYRSPSPRGRYGGRGRDLPTSLLVRNLHRDTRSEDLQRPFGQFGHLKDIYLPRDYYTGEPRGFGFVQYMDPADAADAKYHMDGQILLGRELTVVFAEENRKKPSEMRARERGRSRHDRRSPYSRAPGYGRAYSSSPDYTPSPRRRRHYSRSYSSRERRYRERSYSRSPYGSRMRSSSRSRSLDYSS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00527 205 MobiDBLite consensus disorder prediction 1 37 - -
Pte15g00527 205 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 199 - -
Pte15g00527 205 Gene3D - 34 153 IPR012677 -
Pte15g00527 205 SMART rrm1_1 40 113 IPR000504 GO:0003723
Pte15g00527 205 MobiDBLite consensus disorder prediction 187 205 - -
Pte15g00527 205 MobiDBLite consensus disorder prediction 117 205 - -
Pte15g00527 205 MobiDBLite consensus disorder prediction 117 142 - -
Pte15g00527 205 SUPERFAMILY RNA-binding domain, RBD 39 146 IPR035979 GO:0003676
Pte15g00527 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Pte15g00527 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00527 Pte-Chr15 3800683 3803152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00527 39 128 Eukaryotic Initiation Factors Gene Family AT4G34110 31.111 1.50e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00527 K12900 - cit:102626112 209.92