Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte15g00519 | ATGGAAAAGACTGAGAGAGAGACTCGTGACTTCATGAAAGTTGAATCTTTCTCCCAACTCCCTTTTATCCGTCAAGCACAAACTAAACAAAAGGCAGCAGGAGTAAGGCTTTTTGGTAAGGAATTTGGTAATGGCAACGCCGATAGTCCTGCTACGCCGTCCAATGAGGAGTTCGAAGATATTGGCACTAAGGATGGGAACAGTACTGAGAACAGTGAGACCAACCGCAGGTTTAAATGCCATTATTGCTATAGGAACTTCCCTACCTCTCAAGCCTTAGGTGGTCACCAGAACGCTCACAAGAGAGAAAGGCAACATGCCAAAAGAGCACACCTTCAATCATCCATGTTACATGGCTGCATCACTGATTACTCGCACGTATATGGACTCGCGAACTATGGACAGAGTTCAGTCTCAACGACATATCCCGCATGGAATACTAATAACAGGTCAAGCACCATTGCTAATGATCTTGGTAGAATGTACGAAAGCCATGGAGGCTTCTATAACTCTCAGCAATCCATCACTGGAAACCCTTTAGGCACGTGGAGAACCCCAACAGTTCAAAGCAGCCCTACTTTAAGTCGTGAACAGTTGTTGCGTCCATTGCCGTTGTTTGCTGGTGATGATCTAAGTAGCAGAGCTTCACAGATTGTTGGGTCTAGTTCGCAAAGCAGGTTCGGTGCTAACTATGTCTCAAAACCGAGAGTTGAAGATCATTTGAGTTTGGATCTTCATCTGTAA | 744 | 0.4503 | MEKTERETRDFMKVESFSQLPFIRQAQTKQKAAGVRLFGKEFGNGNADSPATPSNEEFEDIGTKDGNSTENSETNRRFKCHYCYRNFPTSQALGGHQNAHKRERQHAKRAHLQSSMLHGCITDYSHVYGLANYGQSSVSTTYPAWNTNNRSSTIANDLGRMYESHGGFYNSQQSITGNPLGTWRTPTVQSSPTLSREQLLRPLPLFAGDDLSSRASQIVGSSSQSRFGANYVSKPRVEDHLSLDLHL* | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte15g00519 | 247 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Pte15g00519 | 247 | Pfam | C2H2-type zinc finger | 77 | 102 | - | - | |
Pte15g00519 | 247 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 105 | IPR013087 | - | |
Pte15g00519 | 247 | MobiDBLite | consensus disorder prediction | 40 | 73 | - | - | |
Pte15g00519 | 247 | MobiDBLite | consensus disorder prediction | 58 | 73 | - | - | |
Pte15g00519 | 247 | Gene3D | Classic Zinc Finger | 61 | 124 | - | - | |
Pte15g00519 | 247 | PANTHER | ZINC FINGER PROTEIN GIS | 1 | 247 | IPR044291 | GO:0003700|GO:0009739|GO:0010026|GO:0010090 | |
Pte15g00519 | 247 | SUPERFAMILY | beta-beta-alpha zinc fingers | 75 | 106 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte15g00519 | Pte-Chr15 | 3734499 | 3735242 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte15g00519 | 6 | 248 | C2H2 Transcription Factor Family | AT2G41940 | 40.000 | 5.40e-46 | 152 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pte15g00519 | zf-C2H2_6 | 2.2e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte15g00519 | - | - | rcu:8268101 | 258.07 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte15g00519 | 15 | 3734499 | 3735242 | Pte15g00519 | 15 | 3734499 | 3735242 | RCT |