Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00514 ATGGCTCATGGAGGCAGCCATTGTGAAGAGATTGTTGAATGCGATCCTAAAGTTTTGGTCTGTGACCTATCACTGGAAAAATCTGTGCCCCGTGGTAAACTTAAAAAGTCTACTCATGGTTTGTATAGGAAATATGGAAACCATTCAATCAATGGTGTGCGTGAGTTACTTGAGTGCCCTGTCTGCAATGATTTAATGTACCCTCCAATTCTCCAGTGCCCAAATGGACACACTTTATGTGCTGGCTGTAAAAGTAAAGTACATAATTGTTGCCCTACATGCCACTATGATTTGGGGAACATAAGGTGTTTGGCTTTGGAGAAGATTGCAGAAGCATTGGAGCTTCCTTGCAAATACCAGAGTCTAGGCTGTCATGATATTTTTCCCTACTACAACAAGCTCAAGCATGAGCATAACTGTCGATTTCGTCCATATAATTGCCCGTATGCTGGATCTGATTGCTCTGTCATAGGTGACATACCAACTCTAGTTGCCCATCTCAAGGACAACCACAGGGTTGACATGCATGACGGCTGTACCTTTAATCATCGATATGTCAAGTCAAACCCACATGAATTTGAAAATGCCACATGGATGCTAACTGTTTTCAACTGCTTTGGAAGACAATTTTGCTTGCATTTTGAGGCCTTTCAGCTTGGCACAGCTCCAGTCTACATAGCATTTTTAAGATTCATGGGCGAGGATGATGAGGCAAAGAAGTTTAGCTATACCTTGGAAGTCGGTGCAAATGGACGTAAACTCATATGGCAAGGAGTCCCGAGGAGTATTCGAGACAGTCATAAGAAAGTTCGGCATAGTCACGATGGTCTCATTATTCAGAGAAATATGGCTCTTCACTTTTCTGGAGGGGATAAGCAGGAGCTGAAGTTGAGGGTTACTGGTCGTATATGGAGAGAGGATTGA 924 0.4297 MAHGGSHCEEIVECDPKVLVCDLSLEKSVPRGKLKKSTHGLYRKYGNHSINGVRELLECPVCNDLMYPPILQCPNGHTLCAGCKSKVHNCCPTCHYDLGNIRCLALEKIAEALELPCKYQSLGCHDIFPYYNKLKHEHNCRFRPYNCPYAGSDCSVIGDIPTLVAHLKDNHRVDMHDGCTFNHRYVKSNPHEFENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYIAFLRFMGEDDEAKKFSYTLEVGANGRKLIWQGVPRSIRDSHKKVRHSHDGLIIQRNMALHFSGGDKQELKLRVTGRIWRED* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00514 307 SUPERFAMILY RING/U-box 52 98 - -
Pte15g00514 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 300 IPR008974 GO:0005515
Pte15g00514 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 113 IPR013083 -
Pte15g00514 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 305 - -
Pte15g00514 307 FunFam E3 ubiquitin-protein ligase SINAT3 109 167 - -
Pte15g00514 307 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte15g00514 307 SUPERFAMILY TRAF domain-like 113 304 - -
Pte15g00514 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Pte15g00514 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Pte15g00514 307 CDD RING-HC_SIAHs 57 95 - -
Pte15g00514 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Pte15g00514 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00514 Pte-Chr15 3688102 3691858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00514 1 308 C3H Transcription Factor Family AT2G41980 72.727 1.04e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00514 K04506 - qsa:O6P43_005820 530.791