Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00510 ATGGGGGAGGAAACCTCAGATGTAATGAACCTGGACTTGAATCTGGGCCCTTGTCCGGAACCAGCACTAAGCTCAACTCCGAGCGAGTCTGTAAACGTGGAGGGTTTGATTGATGGGCCTCCTCATAGGCTGCGTGCAGCTATGCGGCTTAGGACAAGGCAAGGGTGGAGATGGAGACAGCTTGATGTCTCCTCTCAAACTCAAAATATTTCAATGGAATTGAATCAGCTTTTAGCCAACTCGAGCACTGCTAGTATGTTACAAGCAGGGGAAGGTAGTGTGCCAGCTGAAGGAAGAACAGAAGAGGTACCTAAAATATGTGATAATACTGGTGTCACAGAGGACGTGTCATCAGAGAAAAAGGATGATGTTGAAAAGGGAAACAGAGATGATGGAAGCTTTTTTGATTGTAATATTTGTTTTGACCTCGCTAGGGAACCCGTTTTGACTAGTTGTGGTCACTTGTTCTGTTGGCCTTGCCTTTACAGGTGGTTACATGTGCATTCTGATGCTAAGGAGTGCCCAGTATGTAAGGGAGAGGTGACAACCAAAAATGTAACTCCTATATATGGTCGTGGGAATCATGCCCGTGAACCAGAGGAGGATTCCAGTGTCAAAATTCCTCTTCGTCCACAAGCACGACGCGTTGAGAGTTTAAGGCAAACCATTCAGAGGAATTTGTTTGCATTCCCTGTTGAAGAGATGATTCGTCGAATTGGAAGTAGAATTGACCTGGCGCGAAATGTAGTTCAGCCAAATGATGTTGATGTCCGTGATTCAGCAGAAAGAACAACATCGTTATTAAGTAGGTTTTTGACATCTCGAGGACTGAGAAGAGAACAAACTATGGGTCCACGGCCTGATGAAGTGGTCGATCTAACTCAAGATATCCCTGAGGAAAGCCCCCGGGCTCAACCAGTTTTGCTGCGTAGAACGCAATCACAGAGAACAAGTCTTGCTTCCCTGTTATCTGCACAAAGAACAAACATCAATTCCCTGTCATCTGCATTGAGTTCTGCCGAAAGATTAGTTGAGGCATACTTCCGTAATCACCATCCCATCAGGAATCAAGAACAGCCTCCACCTGTTGATGATCGAGATTCTTTTTCTAGCATTGCCGCTGGTATCAACACAGAGAGTCAAATGGACTCTGCAGTGGAGATCGATTCCCTTGTATCTCTGTCAACATCCTCTTCAAGAAGGCGGAGTGACACTACCAGAGTATCTGATGTGGACAGTGGAGATTCTCGTGCGCCTAGAAGGAGACGGTTGACCTGA 1278 0.4601 MGEETSDVMNLDLNLGPCPEPALSSTPSESVNVEGLIDGPPHRLRAAMRLRTRQGWRWRQLDVSSQTQNISMELNQLLANSSTASMLQAGEGSVPAEGRTEEVPKICDNTGVTEDVSSEKKDDVEKGNRDDGSFFDCNICFDLAREPVLTSCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTTKNVTPIYGRGNHAREPEEDSSVKIPLRPQARRVESLRQTIQRNLFAFPVEEMIRRIGSRIDLARNVVQPNDVDVRDSAERTTSLLSRFLTSRGLRREQTMGPRPDEVVDLTQDIPEESPRAQPVLLRRTQSQRTSLASLLSAQRTNINSLSSALSSAERLVEAYFRNHHPIRNQEQPPPVDDRDSFSSIAAGINTESQMDSAVEIDSLVSLSTSSSRRRSDTTRVSDVDSGDSRAPRRRRLT* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00510 425 FunFam Zinc finger family protein 118 191 - -
Pte15g00510 425 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Pte15g00510 425 MobiDBLite consensus disorder prediction 393 425 - -
Pte15g00510 425 SMART ring_2 137 177 IPR001841 -
Pte15g00510 425 Pfam Zinc finger, C3HC4 type (RING finger) 137 177 IPR018957 GO:0046872
Pte15g00510 425 CDD RING-HC_AtRMA-like 135 178 - -
Pte15g00510 425 MobiDBLite consensus disorder prediction 403 425 - -
Pte15g00510 425 SUPERFAMILY RING/U-box 132 190 - -
Pte15g00510 425 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Pte15g00510 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 118 311 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte15g00510 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00510 Pte-Chr15 3671083 3673539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00510 1 416 C3H Transcription Factor Family AT3G58030 52.252 2.40e-130 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00510 K10666 - qsa:O6P43_009466 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00510 15 3671083 3673539 Pte15g00510 15 3671083 3673539 RCT