Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00501 ATGGATGCTCGTAAGAGAGGGAGGCTGGAAACTGGATTTAACTCCAATGGCGCTTTCAAGAAGTCCAAACAAGAATTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGCTGTCCATTTGGTGAGAGTTGCCACTTCTTGCACTACGTTCCTGGTGGACATAATGCTGTGGCTCAAATGATGAACCTATCACCTGCTGGTCCTATAGCATCCAGAAATGTAGGAACAGCAGCTGCAGTATCTGTGCCCAACGGATCTGGTGGTCCTGTTAAAACACGCCTTTGCAACAGGCATAATACTGCTGAAGGCTGTAAATTTGGCGCCAGATGTCATTTTGCTCATGGAGAATGGGAACTTGGCAGGTCTCTTGGTCCCTCAGCTGATGACCCTCGTGCAATGGGGCCTATTCCAGGACGTATGGGAGGTCGGATGGAGCCTCCACCCACAGGTCCGGCGGTGAGCTTTGGTTTCTCATCCACAGCTAAAATTAGTGTTGATGCTGCTTATGCTGGAGCAATTATTGGGAAGGGTGGTGTGAACTCCAAGCAGATTAGTCGCCAAACAGGAGCAAAGCTCTCTGTCCGGGAACATGAATCAGATCCTAACCTTAGGCAAATTGAATTGGAAGGCACTTTTGAACAAATCAAAGAAGCTGAAAGCATGGTAAGGGAGTTGATTTCATCAGCAATGATGTCTGCATCTTTGAAACCTTCTGTTGCTTCTGGTACTCCTTCCTCTCACATGAGCAATTACAAAACCAAGCTCTGTGAAAATTTTGCTAAAGGCTCTTGTACGTTTGGAGACAGATGTCACTTTGCACATGGAGCTGCTGAATTGAGGAAATCTGGGATTTGA 888 0.4685 MDARKRGRLETGFNSNGAFKKSKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGHNAVAQMMNLSPAGPIASRNVGTAAAVSVPNGSGGPVKTRLCNRHNTAEGCKFGARCHFAHGEWELGRSLGPSADDPRAMGPIPGRMGGRMEPPPTGPAVSFGFSSTAKISVDAAYAGAIIGKGGVNSKQISRQTGAKLSVREHESDPNLRQIELEGTFEQIKEAESMVRELISSAMMSASLKPSVASGTPSSHMSNYKTKLCENFAKGSCTFGDRCHFAHGAAELRKSGI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00501 295 SMART kh_6 168 238 IPR004087 GO:0003676
Pte15g00501 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Pte15g00501 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Pte15g00501 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Pte15g00501 295 CDD KH-I_AtC3H36_like 172 237 - -
Pte15g00501 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pte15g00501 295 Gene3D - 260 293 - -
Pte15g00501 295 Gene3D - 100 132 - -
Pte15g00501 295 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Pte15g00501 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pte15g00501 295 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Pte15g00501 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 247 IPR036612 GO:0003723
Pte15g00501 295 Pfam KH domain 172 235 IPR004088 GO:0003723
Pte15g00501 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pte15g00501 295 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Pte15g00501 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pte15g00501 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Pte15g00501 295 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Pte15g00501 295 Pfam Oligopeptide/dipeptide transporter, C-terminal region 106 126 IPR013563 GO:0000166|GO:0005524|GO:0015833
Pte15g00501 295 Gene3D K Homology domain, type 1 167 259 IPR036612 GO:0003723
Pte15g00501 295 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 152 IPR045877 GO:0003729
Pte15g00501 295 SUPERFAMILY CCCH zinc finger 258 291 IPR036855 GO:0046872
Pte15g00501 295 SUPERFAMILY CCCH zinc finger 101 130 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00501 Pte-Chr15 3603537 3606584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g00501 KH_1 6.9e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00501 - - gmx:100803981 431.409