Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte15g00501 | ATGGATGCTCGTAAGAGAGGGAGGCTGGAAACTGGATTTAACTCCAATGGCGCTTTCAAGAAGTCCAAACAAGAATTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGCTGTCCATTTGGTGAGAGTTGCCACTTCTTGCACTACGTTCCTGGTGGACATAATGCTGTGGCTCAAATGATGAACCTATCACCTGCTGGTCCTATAGCATCCAGAAATGTAGGAACAGCAGCTGCAGTATCTGTGCCCAACGGATCTGGTGGTCCTGTTAAAACACGCCTTTGCAACAGGCATAATACTGCTGAAGGCTGTAAATTTGGCGCCAGATGTCATTTTGCTCATGGAGAATGGGAACTTGGCAGGTCTCTTGGTCCCTCAGCTGATGACCCTCGTGCAATGGGGCCTATTCCAGGACGTATGGGAGGTCGGATGGAGCCTCCACCCACAGGTCCGGCGGTGAGCTTTGGTTTCTCATCCACAGCTAAAATTAGTGTTGATGCTGCTTATGCTGGAGCAATTATTGGGAAGGGTGGTGTGAACTCCAAGCAGATTAGTCGCCAAACAGGAGCAAAGCTCTCTGTCCGGGAACATGAATCAGATCCTAACCTTAGGCAAATTGAATTGGAAGGCACTTTTGAACAAATCAAAGAAGCTGAAAGCATGGTAAGGGAGTTGATTTCATCAGCAATGATGTCTGCATCTTTGAAACCTTCTGTTGCTTCTGGTACTCCTTCCTCTCACATGAGCAATTACAAAACCAAGCTCTGTGAAAATTTTGCTAAAGGCTCTTGTACGTTTGGAGACAGATGTCACTTTGCACATGGAGCTGCTGAATTGAGGAAATCTGGGATTTGA | 888 | 0.4685 | MDARKRGRLETGFNSNGAFKKSKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGHNAVAQMMNLSPAGPIASRNVGTAAAVSVPNGSGGPVKTRLCNRHNTAEGCKFGARCHFAHGEWELGRSLGPSADDPRAMGPIPGRMGGRMEPPPTGPAVSFGFSSTAKISVDAAYAGAIIGKGGVNSKQISRQTGAKLSVREHESDPNLRQIELEGTFEQIKEAESMVRELISSAMMSASLKPSVASGTPSSHMSNYKTKLCENFAKGSCTFGDRCHFAHGAAELRKSGI* | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte15g00501 | 295 | SMART | kh_6 | 168 | 238 | IPR004087 | GO:0003676 | |
Pte15g00501 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 262 | 286 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 102 | 127 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 261 | 288 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | CDD | KH-I_AtC3H36_like | 172 | 237 | - | - | |
Pte15g00501 | 295 | SUPERFAMILY | CCCH zinc finger | 35 | 60 | IPR036855 | GO:0046872 | |
Pte15g00501 | 295 | Gene3D | - | 260 | 293 | - | - | |
Pte15g00501 | 295 | Gene3D | - | 100 | 132 | - | - | |
Pte15g00501 | 295 | ProSiteProfiles | Type-1 KH domain profile. | 169 | 233 | - | - | |
Pte15g00501 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 62 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | FunFam | Zinc finger CCCH domain-containing protein | 256 | 292 | - | - | |
Pte15g00501 | 295 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 161 | 247 | IPR036612 | GO:0003723 | |
Pte15g00501 | 295 | Pfam | KH domain | 172 | 235 | IPR004088 | GO:0003723 | |
Pte15g00501 | 295 | Pfam | RNA-binding, Nab2-type zinc finger | 39 | 59 | - | - | |
Pte15g00501 | 295 | SMART | c3hfinal6 | 100 | 127 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | SMART | c3hfinal6 | 34 | 61 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | SMART | c3hfinal6 | 261 | 287 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 100 | 128 | IPR000571 | GO:0046872 | |
Pte15g00501 | 295 | Pfam | Oligopeptide/dipeptide transporter, C-terminal region | 106 | 126 | IPR013563 | GO:0000166|GO:0005524|GO:0015833 | |
Pte15g00501 | 295 | Gene3D | K Homology domain, type 1 | 167 | 259 | IPR036612 | GO:0003723 | |
Pte15g00501 | 295 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 22 | 152 | IPR045877 | GO:0003729 | |
Pte15g00501 | 295 | SUPERFAMILY | CCCH zinc finger | 258 | 291 | IPR036855 | GO:0046872 | |
Pte15g00501 | 295 | SUPERFAMILY | CCCH zinc finger | 101 | 130 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte15g00501 | Pte-Chr15 | 3603537 | 3606584 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pte15g00501 | KH_1 | 6.9e-13 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte15g00501 | - | - | gmx:100803981 | 431.409 |