Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00500 ATGCAAATAGATGACGAATCGGAAGATGATGAGCATACCATTGAAGAAGATGAAGCTCTTATAACTGCAGAAGAGAGACAAGAGGAGTTGGCTGCTCTGCAAAATGAAATAGATCTACCACTGGAGGAGCTACTCAAACGATATGCTGGTACCAAAGATGCAGATAGTGACAGAAGCAGTTCAGCTCAGGATGAAGATAGCATATACGCCTTAGAGAATGGTGATCATGAGAACAAATATGGTCATTTCGATATCAGTACGCTTGACACAAGCAATTCTAACACAGACCCTTGTCACGGCTGTGATGATGTCAATGGTGGCCTTTCAACATTTGAAGCCCAAGCATCAAATGTCGGAAATAGTCAAACCGAAAATCTAGAAAAAGTTTCCGGCAACTTTAGGAACGAAAATTTTCGTTTTGACTTCAGTGATGAGCAGGAAGATGGCGACTTTATGCTTGCTGCAGCAGAAGAGAAGGATGACGAGACAACTTTATCGGAGGAGGAAAAACTGGAAACAGCAGATTCAATTAATCCTATTGATGAGATTGCTTTATTGCAAAAGGAGAGCGAGATGCCTGTGGAGGAACTCCTTGCAAAGTATAGAAAGGATGATGATGGACTTGATGACGACTCTGATTATAGCTCAGCTTTGTCAGAGGATTTGCCTGATTCTTCTCGACATGAAGATGTCAAATATGGGGATCCAGGTGATGCTGTAGCTGAAGATATCAAAAAGAAGGTTCAATGTGATCCTACAGTTGAAGTTTGCGCACCTGCCCCTCTACCTGAAGTTTTACATGATGACACAGAAAAATGTTTGCAACCATTTGCGGATAATTCGGAAGGCAGGGAAACTGAGAACATAATTGAAGATGCAGCTGCTGCCGCAAGATCTGCACAGCCAACTGGTAATACCTTCTCTACTACTAATGTGCGTACAAAGTTGCCTTTCATCCTTAAGCATCCGCTTCGTGAGTATCAGCATATTGGTCTGGACTGGCTTGTCACGATGTATGAGAAAAGACTGAATGGAATTTTAGCTGATGAAATGGGGCTTGGTAAAACAATAATGACAATTTCGCTACTTGCGCACCTGGCTTGCGAGAAGGGGATTTGGGGGCCACACCTCATTGTTGTTCCAACAAGTGTCATGCTTAATTGGGAGACTGAATTTCTTAAATGGTGCCCTGCTTTTAAAATTTTAACTTATTTCGGAAGTGCAAAGGAGAGGAAGTTAAAAAGGCAGGGATGGCTAAAACCAAACTCCTTTCACGTGTGCATCACAACTTACCGACTTGTCATTCAGGATTCGAAGGTTTTCAAGCGTAAAAAGTGGAAGTATTTGATTCTAGATGAGGCTCATCTCATTAAAAACTGGAAGTCGCAAAGATGGCAGACTCTCTTGAACTTCAATTCCAAACGACGGATTCTTTTGACTGGCACACCTCTGCAGAATGACCTCATGGAACTGTGGTCTCTGATGCACTTCTTGATGCCTCACATCTTCCAGTCTCATCAAGAGTTCAAGGATTGGTTCTGTAATCCAATATCAGGTATGGTAGATGGACAAGAAAAGGTGAACAAAGAAGTTGTTGATCGCCTTCATAATGTGCTCCGGCCATTTATTTTACGGCGATTAAAACAAGATGTTGAAAAGCAGCTTCCAATGAAGCATGAGCATGTTATATACTGTAGGTTGTCAAAAAGGCAGCGTAATTTGTATGAAGATTTCATTGCAAGTTCAGAGACACAAGCCACTCTTGCTAGTGCCAACTTCTTTGGGATGATTAGCATTATAATGCAACTTCGTAAAGTTTGCAATCATCCAGATCTATTTGAGGGTCGACCAATAGTAAGTTCATTTGATATGATTGGTATTGACAATCAATTAAGTTCTTCTGTGTGCTCCATCCTTGAGCCCACCCGTTTTTCTACAGTGGACCTTAGGGGCCTTGGTTTCTTATTTACTCATCATGATTTTTACATGACTTCCTGGGAAAGTGATGAAGTGAAAGCTATAGAGACACCTTCAAGTCTAATTTTAGAGCGCGCTGTAGTTAATCCCTCAGAAATTATTAAACCCGGGTTGAAGAATCAGGGCAAGGTGTCTGGACCTAGTATTTTTGAAGAAATTCAAAAGGCGATTTTGGAAGAGAGACTAAGAGAAACAAAGGAGCGGGTATTGGCTGTTGCATGGTGGAACTCTCTGAAATGCAACAGAAGGCCAGTGTATTCAACAACTTTGAGGGAGCTTGTTACTATAAGGAATAATGTCTATGATATTCATCTTATGAAGTCTAATCCTCTATCCTATATGTACTCGACAAAGCTTGCTGAGATTGTTTTATCTCCAGTTGAACGTTTCCAGATGATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGTGCTGCACCCCCTAAGTGCTGGTGCAGTAAAAGTGGGACATCTGTCTTTTTGCACCCGACTTATAGGCAGGAGTTATCTGAAGTATTGTCACCTCTTCTGTCACCTATTAGGCCAGTGATAGTCAGGAGGCAACTGTATTTCCCAGACAGGCGTCTCATACAGTTTGACTGCGGGAAGTTGCAGGAGCTTGCAGTTTTACTCAGGAAACTAAAATCGGAAGGCCACAGAGCACTGATATTTACTCAAATGACAAAGATGCTTGATGTATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGCGCTTAGATGGGTCCACGCAACCTGAAGAAAGACAGACTTTAATGCAGCGGTTTAACACAAACCCAAAGATTTTTCTTTTCATCTTATCAACCCGCAGTGGGGGTGTTGGTATCAATCTTGTTGGAGCAGACACTGTAATCTTTTATGATAGTGACTGGAACCCTGCCATGGATCAACAGGCTCAAGATCGGTGCCATCGGATTGGCCAAACACGTGAAGTTCACATATATAGGTTAATAAGTGAAAGTACCATTGAAGAGAATATTCTAAAGAAAGCACATCAGAAGCGTGTACTTGATGATTTAGTTATACAAAGCGGTGGGTACAATACTGAATTCTTCAAGAAGCTTGATCCTGTGGAGCTGTTCTCAGGTCATAGAACATTAGAGATGAAAACTATGCCTAAGGAAAAAATTCTGAGTGATGGGATTGAGGTCTCTGTTTCTAATGATGATGTGGAGGCTGCATTGAAACACGTTGAAGACGAAGCAGATTACATGGCTTTGAAGAAAGTTGAGCTGGAAGAAGCTGTAGAAAATCAGGAGTTCACAGAAGAAGCCATAGGGAGATTGGAAGATGATGATTATGTAAATGATGATGATATTAAAATGGATGAGCCAGCAGAACATGGTGGAGCAGTCACTGCATTAAGAAGAGATGATGTTTTGATGCAAAATGTTGGTGATCCTCAGGATGAAAAAGCCCTTTCAGTTGCCAGAAAAGATGATCATATTGATTTGCTGGCTGATGTCAAAGAAATGGCTGCAGCTGCAGCTGCAGCTGGACAAGAAATTTCATCCTTTGAGAACCAGTTTCGCCCAATAGATCGTTATGCCATACGCTTTCTAGAACTTTGGGATCCTATCATAGATAAGGCGGCAATGGATGCTGAAGTAAGGATTGAAGAGACTGAATGGGAGTTAGATCGCATTGAGAAGTACAAGGAAGAAATGGAGGCTGAGATTGATGAAGATGAAGAACCTCTTGTATATGAATGTTGGGATGCTGATTTCGCAACTGAGGCATATAGACAGCAGGTTGAGGCATTGGCTCAGCACCAGTTAATGGAGGAACTTGAAAGTGAAGCTAGGGAAAAGGAAGATGCTGATGCTGAAAGTTTGGATCCCAAAAGAGCTGATACACGTAGTGAACCTAAACCCAAGTCTAAGAAGAAAACAAAGAAAGCTAAGTTTAAGCCCTTGAAAAAAGGATCTCTGGCTTCTGAGTCAAAACCTGTGAAAGAAGAGCCTGAATGGGATGCAATGTCCATTGATGATGAGTTCAGTCTGGATGTGGCTTCTCCTAATGAACCGATGCAGAAAAAACGTAAGAAGGAAGATGAAAGCAAGTTGAAGAAGTCCAAAAAGTTCAAGAAGGTGCTTCCTGTAGCATGTTCTTCAGATTTTGATTCCAACTCTGTGGGTATGCTGCATGAAGAACCTGTAGAGTCAAAGTTACGTGAGGGTGCCATTGACCTTGATCAGAAACCATCAAGCAGAGGCAAGATGGGAGGCAAAATATTCATCTCTCCCATGCCCATCAAACGCATACTGATGATAAAACCAGAGAGAACTAAGAAGACTAGCATTTGGTCTAGAGATTGTCTTCCGTCACCTGATATATGGTGGCCACAAGAGGATGCAATTCTATGTGCCATGATTCATGAATATGGTCCTAACTGGAGTTTCATTAGTGAAACTCTTTATAGCATGACTGCAGGTGGATCTTATAGAGGTAGATATCGTCAGCCTGTCCATTGCAGTGAGAGATATAGGGAGTTGATCCAAAAGTATGTACTGTGTGCTCCAGAGAATGCTAATCACGACAAAGGCAACAGCATGAGCTCTGGGAAGGCTCTTCTCAAAGTGACAGAGGAAAGCATTCGATTGATGTTAGATGTTGCTGCTGAGCAGCCTAATCAAGAATTAGTACTTCAGAAGCATTTCACTGCCCTCCTTTCTTCTATCTGGAAGTTGGCATCACTCGAGGCCCGACAAAGGTTATCATCCTTGTGCAATGGTATTGACGGGAGGTTCTTGCCTTCTCCCAATCAGCTGTCCCAAAACTCATTCAAGATGCCCGAGCAGTTGAAATTTACTGATTTGACAAAAAGTCGGAAGCTTGTAGCTGCTGCACTGGAGAACAGTGTCACGAAAGAAGATGAGAGAGTGACTCTCTCTGAGCAGAGGGAGGAGACACCAATCGTTGCGAATCAGCTAGAGCTAACTTTGGAACTTCAGAGAGACGAAACGGATTCTCTGTTTCCATCTTTACTTAATTTGTCAATAACTGAGGTAGATTTGCCAAAAGCTATGAGCCACGAAGAGGGGGATCATCATCTTAAACATTGTGGATATGCTGCTGAGGACCGTTACAGGGCTGCGGTAAAGTCTTCTGGAGAAGACTGTTTGGGATGGGCTTCATCGGCGTTTCCTAGAAATGATCCAAGGTCTCGAGTGACACCCAAGACACAGACTTTGGGGAAGCACAAACTATCCCTCTCCGACTCGATCAGACCGGCCAAATCAAAATCTAAGAAAACGATGGGTGGTCGTACTGACATTGATAACCAACTGGCGGAATTTCGCTTGCAGTTCATGTCACTGCTCCCGACTGAGGACTCTGATCCAAGTTCTTACGTGTCTACATCTATGATTGAGGATATTGCGACTTCTAATCTACCCTTTGTCTTGAATAATGCAGAATCAGAAGTTGATAGTCGGGTTTTGTTTGCCGACGATTTCAGTTCTGATTTTATATCAGAGCTCGATGAGTACTCATCACTGTCTGACTATACTGACATTGGTTAG 5538 0.4229 MQIDDESEDDEHTIEEDEALITAEERQEELAALQNEIDLPLEELLKRYAGTKDADSDRSSSAQDEDSIYALENGDHENKYGHFDISTLDTSNSNTDPCHGCDDVNGGLSTFEAQASNVGNSQTENLEKVSGNFRNENFRFDFSDEQEDGDFMLAAAEEKDDETTLSEEEKLETADSINPIDEIALLQKESEMPVEELLAKYRKDDDGLDDDSDYSSALSEDLPDSSRHEDVKYGDPGDAVAEDIKKKVQCDPTVEVCAPAPLPEVLHDDTEKCLQPFADNSEGRETENIIEDAAAAARSAQPTGNTFSTTNVRTKLPFILKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVDGQEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMIGIDNQLSSSVCSILEPTRFSTVDLRGLGFLFTHHDFYMTSWESDEVKAIETPSSLILERAVVNPSEIIKPGLKNQGKVSGPSIFEEIQKAILEERLRETKERVLAVAWWNSLKCNRRPVYSTTLRELVTIRNNVYDIHLMKSNPLSYMYSTKLAEIVLSPVERFQMMIDVVESFMFAIPAARAAPPKCWCSKSGTSVFLHPTYRQELSEVLSPLLSPIRPVIVRRQLYFPDRRLIQFDCGKLQELAVLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAHQKRVLDDLVIQSGGYNTEFFKKLDPVELFSGHRTLEMKTMPKEKILSDGIEVSVSNDDVEAALKHVEDEADYMALKKVELEEAVENQEFTEEAIGRLEDDDYVNDDDIKMDEPAEHGGAVTALRRDDVLMQNVGDPQDEKALSVARKDDHIDLLADVKEMAAAAAAAGQEISSFENQFRPIDRYAIRFLELWDPIIDKAAMDAEVRIEETEWELDRIEKYKEEMEAEIDEDEEPLVYECWDADFATEAYRQQVEALAQHQLMEELESEAREKEDADAESLDPKRADTRSEPKPKSKKKTKKAKFKPLKKGSLASESKPVKEEPEWDAMSIDDEFSLDVASPNEPMQKKRKKEDESKLKKSKKFKKVLPVACSSDFDSNSVGMLHEEPVESKLREGAIDLDQKPSSRGKMGGKIFISPMPIKRILMIKPERTKKTSIWSRDCLPSPDIWWPQEDAILCAMIHEYGPNWSFISETLYSMTAGGSYRGRYRQPVHCSERYRELIQKYVLCAPENANHDKGNSMSSGKALLKVTEESIRLMLDVAAEQPNQELVLQKHFTALLSSIWKLASLEARQRLSSLCNGIDGRFLPSPNQLSQNSFKMPEQLKFTDLTKSRKLVAAALENSVTKEDERVTLSEQREETPIVANQLELTLELQRDETDSLFPSLLNLSITEVDLPKAMSHEEGDHHLKHCGYAAEDRYRAAVKSSGEDCLGWASSAFPRNDPRSRVTPKTQTLGKHKLSLSDSIRPAKSKSKKTMGGRTDIDNQLAEFRLQFMSLLPTEDSDPSSYVSTSMIEDIATSNLPFVLNNAESEVDSRVLFADDFSSDFISELDEYSSLSDYTDIG* 1846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00500 1845 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 501 IPR014001 -
Pte15g00500 1845 Gene3D - 293 569 IPR038718 -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 158 177 - -
Pte15g00500 1845 Coils Coil 1083 1103 - -
Pte15g00500 1845 PANTHER HELICASE SRCAP-RELATED 4 1725 - -
Pte15g00500 1845 Coils Coil 16 36 - -
Pte15g00500 1845 Gene3D - 839 1085 IPR027417 -
Pte15g00500 1845 ProSiteProfiles Myb-like domain profile. 1451 1504 IPR001005 -
Pte15g00500 1845 FunFam Photoperiod-independent early flowering 1 294 569 - -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 1268 1362 - -
Pte15g00500 1845 Pfam SNF2-related domain 341 613 IPR000330 GO:0005524|GO:0140658
Pte15g00500 1845 SMART ultradead3 320 513 IPR014001 -
Pte15g00500 1845 CDD DEXQc_SRCAP 324 546 - -
Pte15g00500 1845 CDD SF2_C_SNF 854 989 - -
Pte15g00500 1845 Gene3D - 570 639 - -
Pte15g00500 1845 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 866 1019 IPR001650 -
Pte15g00500 1845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 1041 IPR027417 -
Pte15g00500 1845 Gene3D - 1450 1507 - -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 69 83 - -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 201 237 - -
Pte15g00500 1845 Coils Coil 1210 1230 - -
Pte15g00500 1845 Coils Coil 1258 1281 - -
Pte15g00500 1845 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 570 635 - -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 222 237 - -
Pte15g00500 1845 SUPERFAMILY Homeodomain-like 1448 1506 IPR009057 -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 1346 1362 - -
Pte15g00500 1845 SMART helicmild6 895 978 IPR001650 -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 1311 1328 - -
Pte15g00500 1845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 546 IPR027417 -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 1268 1296 - -
Pte15g00500 1845 MobiDBLite consensus disorder prediction 50 87 - -
Pte15g00500 1845 Pfam Helicase conserved C-terminal domain 866 978 IPR001650 -
Pte15g00500 1845 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 836 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00500 Pte-Chr15 3582155 3591456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00500 344 616 RAD5 or RAD16-like Gene Family AT5G43530 28.571 2.18e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte15g00500 SNF2_N 1.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00500 K11661 - qsa:O6P43_005844 2368.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00500 15 3582155 3591456 Pte15g00500 15 3582155 3591456 RCT