Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00494 ATGATCTCGAGCAATGCAGATAAGTCCAGCTCCTCCCCAATGTCCAAGCTGAACTCCTCAAGCATTAGCTCTGATCAGTCACTCAACGGGTTGAAATTCGGCCAAAAGGTTTACTTTGAGGATATGGGTGCCGCAGCTCAGGCTAAAGCAGGTGATGGGTTGTCGGCTTCTGCATCCAATTCAACCCCAAAGAAGAAGGTCAAGGTTGGTGTTCTTCAAGGAGCTCGGCCTCCTAGGTGTCTGGTTGAGGGCTGTGAAGCGGATCTGACTGGTGCTAAACCTTACTATTCTCGGCATAAAGTGTGTGCCACACACTCAAAGTGGCCTACTGTGGTTGTTGCTGGTCTAGAGCAGAGATTTTGTCAACAATGTAGTAGGTTTCATCAACTTCCTGAATTTGATCAAGGAAAACGAAGCTGTCGCAGGCGCCTTGCTGGCCATAATGAGCGCAGGAGAAAGCCTCCATCTGGAAGTTTATCTAATCATCGCTATGGTCGACTCTCTTCATATCTTTTTGCTTAG 522 0.4789 MISSNADKSSSSPMSKLNSSSISSDQSLNGLKFGQKVYFEDMGAAAQAKAGDGLSASASNSTPKKKVKVGVLQGARPPRCLVEGCEADLTGAKPYYSRHKVCATHSKWPTVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPSGSLSNHRYGRLSSYLFA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00494 173 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Pte15g00494 173 Gene3D - 71 141 IPR036893 GO:0003677|GO:0005634
Pte15g00494 173 MobiDBLite consensus disorder prediction 1 27 - -
Pte15g00494 173 Pfam SBP domain 80 153 IPR004333 GO:0003677
Pte15g00494 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 155 IPR044817 GO:0003677
Pte15g00494 173 SUPERFAMILY SBT domain 78 158 IPR036893 GO:0003677|GO:0005634
Pte15g00494 173 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00494 Pte-Chr15 3550814 3552270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00494 31 172 SBP-box Gene Family AT2G42200 58.621 9.69e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte15g00494 SBP 5.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00494 - - qsa:O6P43_006579 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00494 15 3550814 3552270 Pte15g00494 15 3550814 3552270 RCT