Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00481 ATGCACGTCATGAAACGAGAATTGGATTCCGTGGTGTTGGAAATTCACTCCGGTGATTCAGTACCTACTACTCTTACTGGAGTTTCAGACACCGTAGAATCTCAGAACGAGTCAGAACCACTGGATTCCGAGAATAGGAGCTGCAAGAGGTTTAAAGGGTCTATAGTAAATGGTTATATCGTGTATTCAAGGAAGTCACGAGTTGGCGCTTGTGATGGAACTTTTGATAATGAGAAAAGTAAGAGAATTTTGATCTCTGGTGAGCCTAAGATTAATGGCCACTTATCTGTTGGTTGTGCTGATGGAAAAGACACAAAGTTAAAAAATGTAGTTGCCAACGGACACAATTGCGAATCTCTGTGTTTGGATGAGCCAAAGAGAGAGCAATTACATACTCAGGAGGAAGAAGCTTTTATCAAATTAGAAGAAAAGCCGGTAGTCGGCCTTGCTTATAAGCCTCCTAATGACGAACAGAATGGATTGCCACCAATAAGGATATTTGGTCGATACAGGACTAAACGGAAGATCGAGTCCATAAGGGCTATCTTAAGTGAATCAGAGCCTGTACGTAATGATAATTCAATGACGTCAAGCAAGCTTACGTTCAACAGGAAGCCTATGACTTGCAAGGAGCTCTTTGACACTGGTTTACTTGATGGTGTTCCGGTGGTTTACATGGGTGGCAAGAAGGCATCCGGTCTACGTGGCATCATTAGAGATGGAGGTATACTTTGCTCGTGTTCTTTCTGCAATTGGCGCTGTGTTATCCCGCCTTCCCAGTTTGAGATTCATGCTTGTAGAGCATATAGACGAGCAGCACAATATATTTGCCTTGAGAATGGGAAGAGTCTTCTTGAGTTATTGAGAACGTGCAGAGGGGCACCATTGCAAGCGTTGGAGTCAACAGTTCAAAAAGTCCTTACCTCACCACCTGAAGAAAAATATTTTACATGTAAAAGATGCCGAGTATCATTCCCCCCCACTTGTGTGGCAAGAGTGGGATCCATGTGCGATTCTTGTGCTGAAGAAGAGAACTCTCAAGTCAGCCTGATTCATCCTGATGGCATTTATACCAGATCATCAGAGCCAGTATCAGTGTCAAAGACCTCCAGCAGTTCTATGCTGCCAATGTCCCCTCAATTTAATATTCCGTTGAACACTAAAGAAAAGTCGTTAAAACTGGTCAATGCTTCAAAGTCCCCAGAAGGTGCTCTTGTGACTCCATCTCAAAAGAAGCGTCTGTGGAAGACAAAGAAAAAATCATCTAAGACGACTAGTGGGTTGAAGCCATCAAAAAGTAGTTCAAATTCTTCACAAAAGAGACCATGGAAAATTACTAAGAAGCACCAGAGGTTGCATAGGTTAGTTTTTGAGGAAGACGGGTTGCCTGACGGAACAGAAGTAGCTTATTATGCACGTGGCCAGAAACTGCTTGTGGGTTACAAAAGGGGGTTTGGAATACTTTGTCGTTGCTGCAATTGTGAGGTTAGCCCCTCACTGTTTGAAGCCCATGCAGGATGGGCTTCTCGCAGGAAACCGTATGCATATATTTACACTTCAAATGGGGTTTCCTTACATGAATTAGCTATCTCTCTCTCTAGAGGTTGCAAGTTCTCTGCAAAGGACAATGATGACCTCTGCATTATTTGTTGGGACGGTGGAAATCTAGTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTTTGTCTAGTATTCCTCGTGGTGATTGGTATTGTCAATACTGCCGGAATATGTTCGAGAGGGAAAAGTTTTTGGCAAACAATGCTAATGTTGTTGCAGCTGGAAGGGTTTCAGGAGTGGATCCCGTAGAGCAAATTAGCAACAGATGTGTTCGTATTGTGAAGGACATTGAAACTGAGCTCAGTGGATGTGTTCTATGCAGGGGGTATGACTTCAGTAAATCAGGATTTGGACCTCGAACTATCATACTTTGTGATCAGTGTGAGAAGGAATATCACATAGGCTGTTTACGAGATCATAAAATGGCATTTCTAAAGGAATTGCCACGAGGAGAGTGGTTTTGTACCCCTGATTGCTCGAGAATAAACACTACCTTGAACAAAATGCTGATACGTGGAGCAGACAAACTTCCAGATTTTCTGTTATGTGTAATAAAGCAGAAAATGGAAGAGAGAGGTTTGGATAATCTGGAGCATTGTGATGTTAGATGGAGACTTCTTCATGGAAAAATTGCTTCTCCTGAGACCAGGCCTTTACTTTCTGAGGCTGTGTCCATCTTCCATGAATGTTTTGATCCTATAGTTGATTCCATAAGTGGACGTGATCTTATTCCAGCAATGGTTTATGGAAGGACTATAAGGGGCCAGGAATTTGGTGGAATGTATTGTGCGATATTGATGGTGAACTCAGTTGTCGTGTCTGCTGGACTTTTTCGAATTTTTGGCAGAGATGTTGCTGAGCTACCATTAGTTGCTACACGTGATGGTGACCACGGGAAGGTGAGAGACAGATTTGCTATCCTATTTAAAGGAAAAGATTACATTTGTTCTGCGGCCCACATGACTTGTTATACTGAGTTTCTGGAATTCAACATGCGGTTTTAA 2598 0.4257 MHVMKRELDSVVLEIHSGDSVPTTLTGVSDTVESQNESEPLDSENRSCKRFKGSIVNGYIVYSRKSRVGACDGTFDNEKSKRILISGEPKINGHLSVGCADGKDTKLKNVVANGHNCESLCLDEPKREQLHTQEEEAFIKLEEKPVVGLAYKPPNDEQNGLPPIRIFGRYRTKRKIESIRAILSESEPVRNDNSMTSSKLTFNRKPMTCKELFDTGLLDGVPVVYMGGKKASGLRGIIRDGGILCSCSFCNWRCVIPPSQFEIHACRAYRRAAQYICLENGKSLLELLRTCRGAPLQALESTVQKVLTSPPEEKYFTCKRCRVSFPPTCVARVGSMCDSCAEEENSQVSLIHPDGIYTRSSEPVSVSKTSSSSMLPMSPQFNIPLNTKEKSLKLVNASKSPEGALVTPSQKKRLWKTKKKSSKTTSGLKPSKSSSNSSQKRPWKITKKHQRLHRLVFEEDGLPDGTEVAYYARGQKLLVGYKRGFGILCRCCNCEVSPSLFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSRGCKFSAKDNDDLCIICWDGGNLVLCDGCPRAFHKECASLSSIPRGDWYCQYCRNMFEREKFLANNANVVAAGRVSGVDPVEQISNRCVRIVKDIETELSGCVLCRGYDFSKSGFGPRTIILCDQCEKEYHIGCLRDHKMAFLKELPRGEWFCTPDCSRINTTLNKMLIRGADKLPDFLLCVIKQKMEERGLDNLEHCDVRWRLLHGKIASPETRPLLSEAVSIFHECFDPIVDSISGRDLIPAMVYGRTIRGQEFGGMYCAILMVNSVVVSAGLFRIFGRDVAELPLVATRDGDHGKVRDRFAILFKGKDYICSAAHMTCYTEFLEFNMRF* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00481 865 SUPERFAMILY FYVE/PHD zinc finger 627 691 IPR011011 -
Pte15g00481 865 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 533 610 - -
Pte15g00481 865 MobiDBLite consensus disorder prediction 396 445 - -
Pte15g00481 865 SUPERFAMILY FYVE/PHD zinc finger 540 592 IPR011011 -
Pte15g00481 865 MobiDBLite consensus disorder prediction 426 441 - -
Pte15g00481 865 MobiDBLite consensus disorder prediction 22 38 - -
Pte15g00481 865 Pfam Tify domain binding domain 480 530 IPR032308 -
Pte15g00481 865 Pfam Tify domain binding domain 236 291 IPR032308 -
Pte15g00481 865 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 631 693 - -
Pte15g00481 865 ProSiteProfiles Zinc finger PHD-type profile. 544 589 IPR019787 -
Pte15g00481 865 CDD PHD1_AIRE 546 586 - -
Pte15g00481 865 PANTHER AUTOIMMUNE REGULATOR 143 831 - -
Pte15g00481 865 MobiDBLite consensus disorder prediction 22 45 - -
Pte15g00481 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 611 IPR013083 -
Pte15g00481 865 MobiDBLite consensus disorder prediction 361 382 - -
Pte15g00481 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 693 IPR013083 -
Pte15g00481 865 Pfam PHD-finger 547 588 IPR019787 -
Pte15g00481 865 SMART PHD_3 634 691 IPR001965 -
Pte15g00481 865 SMART PHD_3 546 587 IPR001965 -
Pte15g00481 865 ProSitePatterns Zinc finger PHD-type signature. 547 586 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00481 Pte-Chr15 3461327 3468685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00481 194 825 PHD Transcription Factor Family AT2G36720 54.755 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte15g00481 TDBD 7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00481 - - qsa:O6P43_006593 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00481 15 3461327 3468685 Pte15g00481 15 3461327 3468685 RCT