Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00477 ATGGCCGTTCCAGGAAGAAGCTATGGAGAAGTAGAAGACGATCAAGACGATAACGCACTCTTTGAAGATCACGATCGTGACGAGTACGATAACATTCCTCCTCATCTCTGTGACCTCTTTGAGGCTGTTAAGAGTGGAGATGTCACTGCCCTTCGTCGTGCTCTAGATAATTTATCTGGTGGCATCGATGAACCAGTGGAAGATGGTGACACAGCTCTTCATCTAACCTGTTTATATGGCCACTTCCCCTGTGTTCAGATGCTTTTGGAAAGAGGAGCAAACTTAGAGGTTAGGGATGAAGATGGTGCAATTCCTCTGCATGACGCATGTGCTGGAGGATACTCAGAGATTGTACAACTTTTATTTAACAAAGCTACTGGGGCAGAGCAGATAAAAAGGATGCTAGAAACAATTGATGCTGAAAGCGACACTCCTCTTCATCATGCAGCGAGAGGTCAGCATGTGGAAGTTATAAGATTGTTGCTGGCTGCCGGTGCTTCTTGTACCCAGACAAACTTATTTGGACAGACCCCAGCAGATTTACCCGATCCAGGATCAGAGGCGAAGAAAGTTCTCGAGGCTAATACTAATGCAGCAGTGTGCCAGTAG 609 0.4614 MAVPGRSYGEVEDDQDDNALFEDHDRDEYDNIPPHLCDLFEAVKSGDVTALRRALDNLSGGIDEPVEDGDTALHLTCLYGHFPCVQMLLERGANLEVRDEDGAIPLHDACAGGYSEIVQLLFNKATGAEQIKRMLETIDAESDTPLHHAARGQHVEVIRLLLAAGASCTQTNLFGQTPADLPDPGSEAKKVLEANTNAAVCQ* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00477 202 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Pte15g00477 202 FunFam BRCA1-associated RING domain protein 1 33 200 - -
Pte15g00477 202 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Pte15g00477 202 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Pte15g00477 202 PANTHER SOWAH (DROSOPHILA) HOMOLOG 141 202 - -
Pte15g00477 202 SUPERFAMILY Ankyrin repeat 39 181 IPR036770 -
Pte15g00477 202 SMART ANK_2a 101 130 IPR002110 GO:0005515
Pte15g00477 202 SMART ANK_2a 68 97 IPR002110 GO:0005515
Pte15g00477 202 SMART ANK_2a 141 170 IPR002110 GO:0005515
Pte15g00477 202 Pfam Ankyrin repeats (3 copies) 39 128 IPR002110 GO:0005515
Pte15g00477 202 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Pte15g00477 202 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Pte15g00477 202 Pfam Ankyrin repeats (many copies) 144 181 IPR002110 GO:0005515
Pte15g00477 202 Gene3D - 34 200 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00477 Pte-Chr15 3409846 3412040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00477 31 195 Ion Channels AT2G25600 30.526 2.32e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00477 - - rcu:8283970 277.33