Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00476 ATGGATGCTCATGATGGTCATCTCCCGCGGTGCAACGATATCATGACACAAATTATCAAAGGCAAGCGCACAAAACGACTAAGATTACCAAGCCCACTTAGGCTAGGGATGGCCGTCACTTATTCCAGCACTGCTTCATCTAGCGCCGGAAGAACCGTCACGGATGGTTATGATTCGGGTGGGTGTGACGGAGCTACGACTAATTCATCACTTGCCACGTCAAATGAGGTCAGGAGGAGCAAAGAAGAAGAGGAGGACATGGCCAACTGTTTGATGCTGTTGGCTCAAGGTCAACAGACTCAATATCACAACCGAAAAGTCTCTCAAACCCTAACCCCTGCAGTAATATCAGCTGCAGGCATCAGAGACCAGGGTCTGGCGCAAAATGTGTACCAGTGCAAGACGTGTAACAAGTGCTTTTCTTCATTTCAATCTCTTGGTGGACATAGAGCAAGTCACAAGAGACCCAAAACAATGAGCACAGATCAAGAAACAAAGCAATTACCAATAGTTAAATTTGTGAATGATCAAGAGAATGCTCATCACAGTGAGTCTACAACAAGAACGAACCTTTCCTTACAAATATTAAGCAGTAGCAATAGTAACAGACAAAAAGTTCATGAGTGTTCGCTGTGCGGTGCAGTTTTCTCATCTGGGCAGGCCTTAGGGGGTCACATGAGGAGGCATAGATCAGTTATCAACCACACTGCAGCAAAATCTAATGGATTGGAAACAAGCAGCCCCGAGAGACTAGAATCTAGACAAGCTAGAAGTATATTGAGGTTGGATCTCAATCTTCCAGCTCCAGAAGACGACCAAAGAGAGTCAAAACACACAGATCAAGTTCTCGTCTTCTCTGCTACTCCTTTGATGGATTGCTATTACTAG 888 0.4505 MDAHDGHLPRCNDIMTQIIKGKRTKRLRLPSPLRLGMAVTYSSTASSSAGRTVTDGYDSGGCDGATTNSSLATSNEVRRSKEEEEDMANCLMLLAQGQQTQYHNRKVSQTLTPAVISAAGIRDQGLAQNVYQCKTCNKCFSSFQSLGGHRASHKRPKTMSTDQETKQLPIVKFVNDQENAHHSESTTRTNLSLQILSSSNSNRQKVHECSLCGAVFSSGQALGGHMRRHRSVINHTAAKSNGLETSSPERLESRQARSILRLDLNLPAPEDDQRESKHTDQVLVFSATPLMDCYY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00476 295 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Pte15g00476 295 MobiDBLite consensus disorder prediction 60 84 - -
Pte15g00476 295 Gene3D Classic Zinc Finger 112 185 - -
Pte15g00476 295 Gene3D Classic Zinc Finger 186 259 - -
Pte15g00476 295 MobiDBLite consensus disorder prediction 61 75 - -
Pte15g00476 295 Pfam C2H2-type zinc finger 206 231 - -
Pte15g00476 295 Pfam C2H2-type zinc finger 130 156 - -
Pte15g00476 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 240 IPR013087 -
Pte15g00476 295 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Pte15g00476 295 PANTHER ZINC FINGER PROTEIN ZAT5 69 275 - -
Pte15g00476 295 SUPERFAMILY beta-beta-alpha zinc fingers 130 229 IPR036236 -
Pte15g00476 295 SMART c2h2final6 207 229 IPR013087 -
Pte15g00476 295 SMART c2h2final6 131 153 IPR013087 -
Pte15g00476 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00476 Pte-Chr15 3408114 3409517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00476 16 296 C2H2 Transcription Factor Family AT2G28200 44.482 2.60e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00476 zf-C2H2_6 7.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00476 - - vvi:100252049 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00476 15 3408114 3409517 Pte15g00476 15 3408114 3409517 RCT
Pte15g00476 15 3408114 3409517 Pte18g01589 18 27369810 27371376 RCT
Pte15g00476 15 3408114 3409517 Pte15g01080 15 8089463 8091495 RCT
Pte18g01589 18 27369810 27371376 Pte15g00476 15 3408114 3409517 RCT
Pte15g01080 15 8089463 8091495 Pte15g00476 15 3408114 3409517 RCT