Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00474 ATGGAGTTCCTGGAATCAGCGACTGTGCACTCTCAACTTGAACAAGAGTTTATGTCTGAACGGGGACTTGGACACTACGGCTGTTCGCACTACAAAAGAAGATGCAAGATCAGAGCACCTTGCTGCGATGAAATTTTCGACTGCAGACATTGTCACAACGAATCGAAGAATTCAATGGAGGTTGATCCCGTAAATCGTCATGACATTCCTCGCCATGAATTGAAACGGGTCATCTGCTCTTTATGTAGCACCGAGCAAGATATTCAACAGAAATGCGTTCATTGCGGAGTTTGCATGGGGAAATACTTCTGCTCCAAGTGCAATTTCTTTGATGATGATGTATCAAAAAGACAATACCATTGTGACGAATGTGGCATCTGCAGAGTAGGGGGCCAGGAGAACTTTTTCCATTGTAATGATTGCGGCTGTTGCTACTCTAATATGTTGAAGGACTCACATCATTGTGTGGAAAAGGCAATGCATCAAAATTGCCCTGTTTGCTTTGAGTTTCTTTTTGATACAACAAAGGAGATTACTGTATTGCGATGTGGACATACCATACATTTGGGATGTATAAAGGAAATGGAGCACCATTGCCTGTATTCATGCCCTGTATGCTTAAAATCATATTGTGATATGTCACGTGTATGGGAAAAACTTGATCAGGAGGTAGCATCCACATCCATGCCTGAAATTTACAAGAATAAGATGGTTTGGATTCTCTGCAATGATTGCGGGGAGATGTCTGAAGTACCTTTCCATATCGTAGCTCACAAGTGCCTTAAGTGCAAATCCTATAATACCAGGCAGACTCAAGGAGGGCCAGCAGCATGCTCTCTGAGGGTTGAGGAGATGGTTAGATGA 864 0.4282 MEFLESATVHSQLEQEFMSERGLGHYGCSHYKRRCKIRAPCCDEIFDCRHCHNESKNSMEVDPVNRHDIPRHELKRVICSLCSTEQDIQQKCVHCGVCMGKYFCSKCNFFDDDVSKRQYHCDECGICRVGGQENFFHCNDCGCCYSNMLKDSHHCVEKAMHQNCPVCFEFLFDTTKEITVLRCGHTIHLGCIKEMEHHCLYSCPVCLKSYCDMSRVWEKLDQEVASTSMPEIYKNKMVWILCNDCGEMSEVPFHIVAHKCLKCKSYNTRQTQGGPAACSLRVEEMVR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00474 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 272 - -
Pte15g00474 287 SUPERFAMILY CHY zinc finger-like 25 99 IPR037274 GO:0008270
Pte15g00474 287 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Pte15g00474 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 227 IPR013083 -
Pte15g00474 287 Pfam Zinc-ribbon 211 269 IPR039512 -
Pte15g00474 287 SMART ring_2 164 206 IPR001841 -
Pte15g00474 287 ProSiteProfiles Zinc finger CHY-type profile. 21 97 IPR008913 GO:0008270
Pte15g00474 287 Pfam CHY zinc finger 28 109 IPR008913 GO:0008270
Pte15g00474 287 Gene3D - 235 277 - -
Pte15g00474 287 FunFam RING finger and CHY zinc finger domain-containing protein 1 235 278 - -
Pte15g00474 287 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Pte15g00474 287 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Pte15g00474 287 SUPERFAMILY RING/U-box 162 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00474 Pte-Chr15 3391417 3393395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00474 26 279 C2H2 Transcription Factor Family AT3G18290 40.840 1.05e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00474 K10144 - qsu:112001041 519.62