Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00472 ATGAAAGTCATGAAGCTTCTCTTCCTTTCGATCCTTCTTCTTGTAGTAACAGGAAACTTTGCGTGGGGCATGAACAAAAGAATGGTGATGCTACTTGAACGAAACTCAGAACAACCAAGCGTCAAGAAGGAGTACGTGCCGGAAGCCATGGCTTCTAATAATTATAATGGCAGTGATCCTGATATAAACAACCACCATAGTATACCAAGGGGAAATTGGGGTAATACTCAAGTTTCACCACTGGGTGGAGCTATCCTGAACTTCACTCTTCCTGGACAGCACCCTGATCCTGAAGCTGTCGTCCTCGAAGTTCATAGGAAAGTAAATGCTTCTATAACCAGAAGGCAAATGCTACAGCTTTCAGAAGAGAGGATATCCTACAATTGCCTAACGGGGAACCCCATAGACGACTGCTGGAAATGTGACCCAGACTGGGCCAAAAATCGTCAAAGGTTAGCTGATTGTGCCATTGGGTTTGGCCAGCACGCATTAGGTGGCAAGAATGGGGACTTCTACATTGTGACAGACGCTTCGGACGACGATGCAGTGAATCCAAAGCCAGGAACACTGAGATACGCTGTGATACAGCCTCAGCCTCTATGGATCGTGTTCCCAACGAGCATGATGATTAAACTCTCACAGGAACTCATTTTCAACAGCTATAAAACACTTGACGGGCGTGGAGCAAATGTTCACATCGTGGGTGGTGGCTGCATTACTTTGCAGTATATAAGCAATGTCATAATTCACAATATCCATGTCCACCATTGTCATCCCTCTGGATACGCCAACGTGAGGTCAAGTCCAACACATTACGGGTGGCGCACAAAATCAGACGGTGACGGAATATCTATCTTTGGGTCCAAAGACATATGGATAGACCATTGCACTCTCTCTCACTGTGAAGATGGCTTGATAGATGCTGTCATGGGATCCACGGCTATAACTATTTCAAACAATTACTTCTTCCATCACGATGAGGTGATGCTGTTAGGTCACAGTGATGAGTATACACCAGATTCAGGCATGCAAGTGACCATAGCCTTCAACCATTTTGGTGAGAATCTTGTGCAGCGCATGCCTAGGTGTAGGCTTGGCTACATTCATGTCGTCAACAACGATTATACACATTGGGAGATGTATGCTATCGGAGGCAGTGGCCGTCCTACCATCAATAGCCAGGGCAACCGTTACACTGCCCCATCTAACCCCTTTGCGAAGGAGGTGACTAAAAGATTAGACACAGGGAAGGGAGAGTGGAAGCAATGGAATTGGAGATCAGATGGAGATGTAATGGTGAACGGAGCATTCTTCGTGGCATCAGGTGCAGGTGCAGAGTTTAGGTATGAAAAGGCGTACAGCGTAGAACCTAAATCTGCTTCCTTCGTCGACCAACTAACAATGCAAGCGGGTGCATTTGGCGGGAGGAAAAACAATTTGGGTATGTGGAGCACTGGAACTGATGGCGGGAATGGTGGAAATGATTCTGGGTCAGGTCCTGATTACACTGATGATATGTCCTCAAGCAAAAGGCTATCACCACATTCGTTTAATTCCTCTGTTCTAACCTTTCTGACTGTCCTCTCATGTTTGGTATTATGTGATTTTCGCCTGAAAGCTATATCACTGTGA 1632 0.4596 MKVMKLLFLSILLLVVTGNFAWGMNKRMVMLLERNSEQPSVKKEYVPEAMASNNYNGSDPDINNHHSIPRGNWGNTQVSPLGGAILNFTLPGQHPDPEAVVLEVHRKVNASITRRQMLQLSEERISYNCLTGNPIDDCWKCDPDWAKNRQRLADCAIGFGQHALGGKNGDFYIVTDASDDDAVNPKPGTLRYAVIQPQPLWIVFPTSMMIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHVHHCHPSGYANVRSSPTHYGWRTKSDGDGISIFGSKDIWIDHCTLSHCEDGLIDAVMGSTAITISNNYFFHHDEVMLLGHSDEYTPDSGMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDYTHWEMYAIGGSGRPTINSQGNRYTAPSNPFAKEVTKRLDTGKGEWKQWNWRSDGDVMVNGAFFVASGAGAEFRYEKAYSVEPKSASFVDQLTMQAGAFGGRKNNLGMWSTGTDGGNGGNDSGSGPDYTDDMSSSKRLSPHSFNSSVLTFLTVLSCLVLCDFRLKAISL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00472 543 SUPERFAMILY Pectin lyase-like 126 461 IPR011050 -
Pte15g00472 543 PANTHER PECTATE LYASE 18-RELATED 89 474 IPR045032 GO:0030570
Pte15g00472 543 MobiDBLite consensus disorder prediction 483 507 - -
Pte15g00472 543 FunFam Pectate lyase 132 474 - -
Pte15g00472 543 Pfam Pectate lyase 217 387 IPR002022 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 279 300 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 155 172 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 215 231 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 179 204 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 381 400 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 452 475 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 359 378 IPR018082 -
Pte15g00472 543 PRINTS Pollen allergen Amb family signature 423 447 IPR018082 -
Pte15g00472 543 Gene3D - 132 474 IPR012334 -
Pte15g00472 543 SMART amb_all 207 404 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00472 Pte-Chr15 3372488 3376989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00472 94 533 Polysaccharide Lyase AT3G53190 75.395 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00472 K01728 - qsu:112022916 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00472 15 3372488 3376989 Pte15g00472 15 3372488 3376989 RCT