Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00464 ATGGGAAGGGCTCCCTGTTGTGATAAAGCTAATGTGAAGAAAGGGCCATGGTCTCCTGAGGAAGATGCAAAACTAAGACAGTACATAGAGAAACATGGGACAGGAGGGAATTGGATTGCTTTTCCCCACAAAGCTGGTTTAAGACGATGTGGAAAAAGCTGTAGATTGAGATGGCTTAACTATCTTAGACCTAACATTAAGCACGGCGAGTTCTCTGAGGAAGAAGATATGATCATTTGCAGTCTATATGTTAGCATCGGAAGCAGATGGTCTATTATAGCAGCTCAGTTACAGGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAACTAATGAGCGGCATCATTCCTCTCCCTCAAAGGAAACTTCAAGGGGGGCCCTTCTCAACTTTTCTTCAAGCAAATTCATCAGCTTCATCAACATCAACATCAACATCATCAACTTCACCATTGTCATTCAAAGACGGAAACAACACTCGCAACAACCTAGAGACAACTCATTCAGGCCCCATTCCCATTTCATTTTCTTCAAGTCTCGTGAGTTGCACCTCTTCCAGTCCTACTGATTCAGTGATTCAAGAAAGTTATGTGGGTGGTTTTCCTAATTACCAAGTTAAACATAGCCTCCTCATGTTTGGGGGTCATGAAGCTAGTTGCAGCTCTTCTTATGGAAGGTGCAGTAACCAGATAGGCCACTGCCAAGAAGCAGAATATGAATTTCCAGCAAATGTTGGTGGAATCAAAGTGGAGCAAATGGATCTGCAGGACTATTTGAAAAGAGGGGTTCGAGAAAGCCAGGATTTCATGCAATTAGATGGGTGGACAGAAAGACAAAATGGGTTTAGGGGAGAAAACCAAACAGAATATGAGTATGGTCTAGAAGAGATTAAACAGCTAGTAAGCACTAACAGTTGTAACACCTTTCTGTTTGATGAAAACAAGACAGTGGAAAGTGGATTGTACTACTGCTGA 990 0.4222 MGRAPCCDKANVKKGPWSPEEDAKLRQYIEKHGTGGNWIAFPHKAGLRRCGKSCRLRWLNYLRPNIKHGEFSEEEDMIICSLYVSIGSRWSIIAAQLQGRTDNDIKNYWNTKLKKKLMSGIIPLPQRKLQGGPFSTFLQANSSASSTSTSTSSTSPLSFKDGNNTRNNLETTHSGPIPISFSSSLVSCTSSSPTDSVIQESYVGGFPNYQVKHSLLMFGGHEASCSSSYGRCSNQIGHCQEAEYEFPANVGGIKVEQMDLQDYLKRGVRESQDFMQLDGWTERQNGFRGENQTEYEYGLEEIKQLVSTNSCNTFLFDENKTVESGLYYC* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00464 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte15g00464 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pte15g00464 329 PANTHER OS09G0431300 PROTEIN 1 278 - -
Pte15g00464 329 Gene3D - 70 130 - -
Pte15g00464 329 Gene3D - 7 68 - -
Pte15g00464 329 MobiDBLite consensus disorder prediction 143 175 - -
Pte15g00464 329 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte15g00464 329 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte15g00464 329 CDD SANT 16 62 IPR001005 -
Pte15g00464 329 SMART sant 13 64 IPR001005 -
Pte15g00464 329 SMART sant 67 115 IPR001005 -
Pte15g00464 329 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte15g00464 329 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte15g00464 329 CDD SANT 70 113 IPR001005 -
Pte15g00464 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pte15g00464 329 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00464 Pte-Chr15 3322817 3325472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00464 1 129 MYB Transcription Factor Family AT2G36890 82.171 3.93e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g00464 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00464 K09422 - qsa:O6P43_010254 379.407