Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00455 ATGATTACGTTTATGGATACGAATGAGAAATTGAAAGAGGTCGAGAAATGCTTAGATCCTCAATTTTGGCACGCATGTGCGGGCGGGATGGTGCAAATGCCGCTTGTTAACACCAAAGTCTTCTACTTTCCTCAAGGTCATGCTGAGCATGCTTCTGGACCCGTTGATTTCAGGAATTGCTCCAGGCTTCCTGCCTATATTCCTTGTAGAGTCTCTGCCATCAAGTTTATGGCTGATACAGATACTGATGAGGTCTATGCAAAAGTTAGGCTTGTACCTGTGAAAGCAAACGAATCTGATTATGAAGATGATGGGATGGATGGGGTTAATGCCTCTGAAAACCAGGACAAACCTGCTTTATTTGCTAAAACGTTGACTCAGTCTGATGCAAACAACGGAGGGGGTTTCTCTGTACCTAGATACTGTGCAGAGACAATCTTTCCTCGTTTAGACTATTCTGCAGATCCTCCTGTTCAAGCCATCCTAGCTAAGGATGTTCATGGAGAAATATGGAAATTCAGGCATATCTACAGAGGCACGCCTCGCCGGCATCTTTTGACTACTGGGTGGAGTACCTTTGTAAACCACAAGAAACTAGTTGCAGGAGATTCAATTGTGTTTTTGAGGTCACAAAATGGGGATCTGTGTGTTGGTATTAGGCGAGCTAAGAGGGGAATTGGCTGTGGACCTGCCTCATCATCAGGTTGGAATCCAGCTGGTGGAAATTCTGGCATGCCGTATGGAGGATTTTCTGCATTTTTGGGTGATGACAGCAAGCTAATGAGAAACGAAAATGGCGATGGTCTAAGCTCAAATGGGTGTTCCATTGGCAGAGGGAAAGTCGGGCCTGATGCAGTTATTGAAGTTGCAACACTTGCTGCTAAAGGACAACCATTTGAGGTTGTTTACTATCCTCGAGCTAGTACTCCTGAGTTTTGTGTGAAGGCCTCCTTGGTTAAAGCAGCATTACAGATTCAGTGGTGCTCCGGAATGAGGTTCAAAATGCCTTTCGAAACTGAGGACTCCTCGCGGATTAGTTGGTTTATGGGAACTATATCATCAGTTAAAGTTGCCGATCCCCTTCACTGGCCAGATTCACCTTGGAGGCTTCTCCAGGTTGCATGGGATGAGCCAGATTTACTTCAAAACGTGAAACGAGTGAGCCCATGGCTTGTGGAATTGGTTTCCAACCTCCCTGCCATCCATCTTTCCCCTTTCTCACCTCCAAGGAAGAAGATGAGATTGTCACCACATTCAGAATTCCCCGTCAATGGACAAATTCCAGTTCCACCCTTTTCCACCAACCTCATCGGTGCCAATACCCCGTTTAGTTGTTTCCCCAATAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTTCCAGACCTCCATCTCAACAAAATGCAGTCAGCTATGTTTCCAGGCAGTTTCCCGATGCTCGATCATACTGCTTTGACCAGGGTCTCGAATTGCCTGACGACACAAAAGCCTGTCATGAATGAGAATTCATCTTGCTTATTGACCATGGCTAATTCGACTCAGACTTTGAAGAAGGTCGATAATGTGAAGGCACCTCAACTTATGCTTTTTGGTCAACCTATACTTACCGAGCAGCAGATATCTCTCACCTGTTCTGGGGATACTGTATCACCAGTTTTTAATGGCAACAGTTCATCTGAAGGGAAGGCTGAGAAAATCACAAAATTTTCTGATGGGAACAGTTTTTCTCTTAAGCAACATGGCCGACAAGAACGGTCACATTGTGATGTATTTCTATGGTACAAAGGTAACCATCAAGAAAGTGAACCGTGTTTGGAGACAGGTCACTGCAAAGTTTTTATGGAATCAGAAGAAGTAGGTCGCACCCTCGACTTGTCACTGCTTGGATCATATGAAGAATTGTACAGAAAGCTAGAAGTCATGTTTGGAATAGAAAATACTGAGATGCTAAATCAAGTGCTGTACCTTGACCTAGCCGGGGCTGTCAAACATATTGGCGAAGAACCATTCAGGTTTGAATCATTAGCCTGTCTTCTTCTATACATTCGTTCTGACCATAAATGTTTGCGATGTAATGAACCTGGCTTTTTATGCCAATGCAGTGATTTCTTGAGAACAGCCAGGAGGTTGACAATTCTAACTGATTCAAGTGACAAGCAGCAATAA 2184 0.4451 MITFMDTNEKLKEVEKCLDPQFWHACAGGMVQMPLVNTKVFYFPQGHAEHASGPVDFRNCSRLPAYIPCRVSAIKFMADTDTDEVYAKVRLVPVKANESDYEDDGMDGVNASENQDKPALFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQAILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRSQNGDLCVGIRRAKRGIGCGPASSSGWNPAGGNSGMPYGGFSAFLGDDSKLMRNENGDGLSSNGCSIGRGKVGPDAVIEVATLAAKGQPFEVVYYPRASTPEFCVKASLVKAALQIQWCSGMRFKMPFETEDSSRISWFMGTISSVKVADPLHWPDSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNLPAIHLSPFSPPRKKMRLSPHSEFPVNGQIPVPPFSTNLIGANTPFSCFPNSSPAGMQGARHAHYGLSFPDLHLNKMQSAMFPGSFPMLDHTALTRVSNCLTTQKPVMNENSSCLLTMANSTQTLKKVDNVKAPQLMLFGQPILTEQQISLTCSGDTVSPVFNGNSSSEGKAEKITKFSDGNSFSLKQHGRQERSHCDVFLWYKGNHQESEPCLETGHCKVFMESEEVGRTLDLSLLGSYEELYRKLEVMFGIENTEMLNQVLYLDLAGAVKHIGEEPFRFESLACLLLYIRSDHKCLRCNEPGFLCQCSDFLRTARRLTILTDSSDKQQ* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00455 727 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte15g00455 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 708 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte15g00455 727 Gene3D - 611 695 - -
Pte15g00455 727 FunFam Auxin response factor 327 400 - -
Pte15g00455 727 SMART B3_2 121 223 IPR003340 GO:0003677
Pte15g00455 727 CDD B3_DNA 120 221 IPR003340 GO:0003677
Pte15g00455 727 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Pte15g00455 727 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Pte15g00455 727 Gene3D - 119 223 IPR015300 -
Pte15g00455 727 ProSiteProfiles PB1 domain profile. 613 691 IPR000270 GO:0005515
Pte15g00455 727 SUPERFAMILY DNA-binding pseudobarrel domain 114 223 IPR015300 -
Pte15g00455 727 Gene3D - 326 399 - -
Pte15g00455 727 FunFam Auxin response factor 119 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00455 Pte-Chr15 3231573 3236078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00455 14 721 B3 DNA Binding Superfamily AT4G30080 55.340 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte15g00455 B3 2.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00455 - - cave:132192247 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00455 15 3231573 3236078 Pte15g00455 15 3231573 3236078 RCT
Pte17g00904 17 24166254 24170404 Pte15g00455 15 3231573 3236078 RCT